Ccar053205.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000015.1:13203269-13214833[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.4 7.6e+02 2.0 1.9 18 34 147 163 144 168 0.79 2 21 1.9 3.6e+03 -0.2 1.0 17 34 174 193 160 196 0.78 3 21 0.0027 5 9.0 0.5 13 38 198 224 190 224 0.82 4 21 0.042 78 5.2 0.5 18 35 231 250 227 252 0.86 5 21 0.024 46 5.9 0.1 13 39 254 277 250 281 0.71 6 21 0.73 1.4e+03 1.2 0.5 18 35 287 305 283 309 0.74 7 21 0.034 64 5.5 1.5 18 35 315 334 306 337 0.86 8 21 0.0026 4.9 9.0 0.2 13 38 338 364 334 364 0.82 9 21 0.032 61 5.5 0.4 18 35 371 390 367 392 0.81 10 21 0.033 61 5.5 0.1 18 39 399 417 391 421 0.81 11 21 0.47 8.8e+02 1.8 0.1 18 34 427 445 423 449 0.76 12 21 0.3 5.7e+02 2.4 1.0 15 30 452 469 443 476 0.72 13 21 0.0052 9.7 8.1 0.5 13 39 478 501 469 505 0.77 14 21 0.027 50 5.8 0.8 18 35 511 530 506 532 0.81 15 21 0.0024 4.6 9.1 0.2 13 38 534 560 528 560 0.83 16 21 0.11 2.1e+02 3.8 0.1 18 34 567 585 563 589 0.76 17 21 0.36 6.7e+02 2.2 1.4 15 30 592 609 583 620 0.73 18 21 0.015 27 6.6 0.7 13 39 618 641 609 645 0.73 19 21 0.045 85 5.1 1.3 17 33 650 668 642 672 0.81 20 21 0.002 3.7 9.4 0.3 13 38 674 700 668 700 0.82 21 21 0.11 2.1e+02 3.8 0.1 18 34 707 725 703 728 0.76
Sequence Information
- Coding Sequence
- ATGGAAGTTCGACAGTCTGAGATAAAAATTGAAGTTATGCATACAGAAATTGAATTGAAAGTTGAGTGTGAAGATTTAATTACTGATGAAAACTCCCAGCCAGATCCTGTTGGATTTGATTCGATTCCCGTGAAAGTGGAACAGGAGATCGCTCAGGAAGATGAGTGGAGTCCAATTGAAGATGAGAACTGCTCTTCAAATCCTCTGGCAAATAATTCCATTAAAACTGAAAAGGATAACGCAAGCGGTTCTGAAGAGGTGAAATGGGAAGTCGAAAAATCTAGTGGAGAACTGGTGTCGATTAATATAGACTATAGTTATTCTAGCGGTGATATAGACAGTGATTGTGGTGCAACACGTGTCACCACAAGTAGTGATTCTGAATTAAATAGCGCAACGTATCGTAAGGTATCATCGCGTGGTGGTGTTACGCCATTTAAATGTAACGTCTGTAATAAAGAGTTCATTCAGAGAGGTAATTTGAAATGTCACCGGTTAACACATACCGGTGCTAAACCGTTTAAATGCGAATTGTGCCAAATCGAATTCACGCAGAAAGGTACGCTAAACACTCATATGTTATTACATAACGATTCGAAGCCGTTCAAGTGCGATTTATGCGGAAAAGAATTTACGCAAAAAGGGTCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGCGAATTGTGCCAAAAGAAATTCACGCAGAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCATTCAAGTGCGATTTATGCGGGAAAGAATTTACGCTAAAAGCATCGCTTAGTCGtcacatgttatcacatagtggcgCTAAACCGTTTAAATGTGATTTGTGTCCGAACGAATACACACAGAAATCTCATCTAAACAAgcacatgttatcacatagtggcgCTAAACCGTTTAAATGCAATGTTTGCCGAAAGGAATTCAAGCATAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCATTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGGGTCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGCGAATTGTGCCGAAAGGAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTATTGCATGCCGATTCGGAGCCTTTCATGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAACGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGACGGAATACACACGAAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGACGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCATGCAGAAACATTCGCTGAACTCTCATATGTTATTGCATACCAATTCCAATCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAACGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCTGTTTAAATGCGAATTGTGCCGAAAGAAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCATCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGAACGAATACACACGAAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGACGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCATGCAGAAACATTCGCTGAACTCTCATATGTTATTGCATACCAATTCCAATCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAAAGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCTGTTTAAATGCGAATTGTGCCGAAAGAAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTCTTGCATGCCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCATCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGAACGAATACACACGGAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGACGCTAAACGGTTTTAA
- Protein Sequence
- MEVRQSEIKIEVMHTEIELKVECEDLITDENSQPDPVGFDSIPVKVEQEIAQEDEWSPIEDENCSSNPLANNSIKTEKDNASGSEEVKWEVEKSSGELVSINIDYSYSSGDIDSDCGATRVTTSSDSELNSATYRKVSSRGGVTPFKCNVCNKEFIQRGNLKCHRLTHTGAKPFKCELCQIEFTQKGTLNTHMLLHNDSKPFKCDLCGKEFTQKGSLSSHMLSHSGAKPFKCELCQKKFTQKYSLNTHMLLHADSKPFKCDLCGKEFTLKASLSRHMLSHSGAKPFKCDLCPNEYTQKSHLNKHMLSHSGAKPFKCNVCRKEFKHKYSLNTHMLLHADSKPFKCDLCGKEFTQKGSLSSHMLSHSGAKPFKCELCRKEFTQKSSLNTHMLLHADSEPFMCDLCGKEFTQKATLSRHMLSHSGAKPFKCDLCPTEYTRKSYLATHMLSHSDAKPFKCELCQKEFMQKHSLNSHMLLHTNSNPFKCDLCGKEFTQKATLSRHMLSHSGAKLFKCELCRKKFTQKSSLNTHMLLHADSKPFKCDLCGKEFTQKASLSSHMLSHSGAKPFKCDLCPNEYTRKSYLATHMLSHSDAKPFKCELCQKEFMQKHSLNSHMLLHTNSNPFKCDLCGKEFTQKAKLSRHMLSHSGAKLFKCELCRKKFTQKSSLNTHMFLHADSKPFKCDLCGKEFTQKASLSSHMLSHSGAKPFKCDLCPNEYTRKSYLATHMLSHSDAKRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283789;
- 90% Identity
- iTF_00283789;
- 80% Identity
- iTF_00283789;