Ccar053208.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catonia carolina
Gene Symbol
-
Assembly
GCA_035578175.1
Location
JAQMRL010000015.1:13241543-13253822[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 8.7e-06 0.0014 20.7 0.5 3 23 2 22 1 22 0.97
2 29 1.8e-05 0.0028 19.8 1.2 1 23 28 50 28 50 0.98
3 29 4.7e-07 7.5e-05 24.7 0.7 1 23 56 78 56 78 0.98
4 29 8.2e-05 0.013 17.7 0.7 1 23 84 106 84 106 0.98
5 29 0.00041 0.065 15.5 9.4 1 23 112 134 112 134 0.98
6 29 0.00016 0.025 16.8 1.7 1 23 140 162 140 162 0.98
7 29 0.015 2.4 10.5 6.4 1 23 168 190 168 190 0.97
8 29 1.9e-07 3e-05 26.0 2.6 1 23 269 291 269 291 0.99
9 29 2.7e-06 0.00043 22.3 2.1 1 23 297 319 297 319 0.98
10 29 1.3e-06 0.00021 23.3 0.9 1 23 325 347 325 347 0.98
11 29 9.8e-06 0.0016 20.6 2.8 1 23 353 375 353 375 0.97
12 29 1.5e-06 0.00023 23.2 1.0 1 23 381 403 381 403 0.98
13 29 2.1e-05 0.0033 19.5 4.1 1 23 409 431 409 431 0.98
14 29 6.3e-05 0.01 18.0 0.6 1 23 437 459 437 459 0.98
15 29 2.4e-06 0.00039 22.5 2.1 1 23 465 487 465 487 0.98
16 29 4.6e-07 7.3e-05 24.7 0.8 1 23 493 515 493 515 0.98
17 29 2.4e-06 0.00039 22.5 2.1 1 23 521 543 521 543 0.98
18 29 1.6e-06 0.00026 23.0 0.7 1 23 549 571 549 571 0.98
19 29 1.4e-05 0.0023 20.0 2.8 1 23 577 599 577 599 0.98
20 29 1.5e-05 0.0024 19.9 4.8 1 23 605 627 605 627 0.98
21 29 3.7e-06 0.00058 21.9 0.9 1 23 633 655 633 655 0.98
22 29 2.1e-06 0.00034 22.7 2.0 1 23 661 683 661 683 0.98
23 29 5.4e-07 8.7e-05 24.5 0.7 1 23 689 711 689 711 0.98
24 29 1e-05 0.0017 20.5 0.8 1 23 717 739 717 739 0.98
25 29 6.7e-05 0.011 17.9 3.2 1 23 745 767 745 767 0.98
26 29 3.1e-07 4.9e-05 25.3 0.5 1 23 773 795 773 795 0.98
27 29 2.2e-06 0.00034 22.6 2.9 1 23 801 823 801 823 0.98
28 29 7.8e-07 0.00012 24.0 0.8 1 23 829 851 829 851 0.98
29 29 4.5e-05 0.0072 18.5 0.7 1 23 857 879 857 879 0.98

Sequence Information

Coding Sequence
ATGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCGACGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGCGAATTGTGCCAATATGAATTCACGCAGAAAGTTTCGCTAAATACTCATATGTTATTGCATGCCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCATCGCTGAGTAGtcacatgttatcacatagtggcgCTGAACCGTTTAAATGTGATTTGTGTCCGAACGAATACACACAGAAATCTTATCTAGTTACCCACATGTTGTCACATAGTGACGCTAAGCCGTTTAAATGTGATTTGTGTCATCACGAATTCAAACAGAAATCTCATCTAACCACGCACATGTTTTCACATAGTGGTGTTAAACCGTTCAAATGCAATTTGTGTCGTTCCGAATTCAGACGGAAAACTGATCTTGCCACCCACATGTTGTCACATAGTGACGCTAAACCGTTTAAATGTGATTTGTGTTGTAACGAATTCAGACGGAAATCTCATCTAACCACGCACATGTTGTTACATAGAGCGCTAAACCATTTAAATGCAATTTGTGTCGATAACGCAAGCGGTTCTGAAGAGGTGAAATGGGAAGTCGAAAAATCTAGTGGAGAACTGGTGTCGATTAATATAGACTATAGTTATTCTAGCGGTGATATAGACAGTGATTGTGGTGCAACACGTGTCACCATAAGTAGTGATTCTGAATTAAATAGCGCAACGTATCGTAAGACATCATCGCGTGGTGGTATTACGCCATTTAAATGTAACGTCTGTAATAAAGAGTTCACTCAGAGAGGTAATTTGAAACGTCACCGGTTAACACATACCGGTGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCAGGCAGAAAGATACGCTAAAGACTCATATGTTATTGCATACCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGAAAAGAATTTACGAAAAAAGCGTCGCTCAGTAGCCACATGTTGTCACATAGTGACGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCACGCAGAAATATTCGCTGAATACTCATATGTTTTTGCATGGCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTATGCAAAAATCGTCGCTGAGTAGccacatgttatcacatagtggcgCTAAGCCATTTAAATGTGATTTGTGTCCGAACAAATACAGACAGAAATCTCATCTAACCAAgcacatgttatcacatagtgaGGCTAAACCGTTTAAATGTGATTTGTGTCCGAACGAATACACACAGAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGATGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCACGCAGAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCATTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGGGTCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGCGAATTGTGCCAAAAGGAATTCACGCAGAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCATTCAAGTGCGATTTATGCGGGAAAGAATTTACGCTAAAAGCATCGCTTAGTCGtcacatgttatcacatagtggcgCTAAACCGTTTAAATGTGATTTGTGTCCGAACGAATACACACAGAAATCTCATCTAACCAAgcacatgttatcacatagtggcgCTAAACCGTTTAAATGCAATGTTTGCCGAAAGGAATTCAAGCATAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCATTCAAGTGCGATTTATGCGGAAAAGAATTTACGCAAAAAGGGTCGCTGAGTAGTCACACGTTATCACATAGTGGCGCTAAGCCGTTTAAATGCGAATTGTGCCGAAAAGAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTATTGCATGCCGATTCGGAGCCTTTCATGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAACGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGAACGAATTCACACGAAAATCTTATCTAGCCACCCACATGTTGTCACATATTGACGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCATGCAGAAACATTCGCTGAACTCTCATATGTTATTGCATACCAATTCCAAGCCGTTCGAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAACGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCTGTTTAAATGCGAATTGTGCCGAAAGAAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGGAAAGATTTTACGCAAAAAGCATCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGAACGAATACACACGGAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGACGCTAAACTGTTTTAA
Protein Sequence
MCDLCGKEFTQKATLSSHMLSHSGAKPFKCELCQYEFTQKVSLNTHMLLHADSKPFKCDLCGKEFTQKASLSSHMLSHSGAEPFKCDLCPNEYTQKSYLVTHMLSHSDAKPFKCDLCHHEFKQKSHLTTHMFSHSGVKPFKCNLCRSEFRRKTDLATHMLSHSDAKPFKCDLCCNEFRRKSHLTTHMLLHRALNHLNAICVDNASGSEEVKWEVEKSSGELVSINIDYSYSSGDIDSDCGATRVTISSDSELNSATYRKTSSRGGITPFKCNVCNKEFTQRGNLKRHRLTHTGAKPFKCELCQKEFRQKDTLKTHMLLHTDSKPFKCDLCGKEFTKKASLSSHMLSHSDAKPFKCELCQKEFTQKYSLNTHMFLHGDSKPFKCDLCGKEFMQKSSLSSHMLSHSGAKPFKCDLCPNKYRQKSHLTKHMLSHSEAKPFKCDLCPNEYTQKSYLATHMLSHSDAKPFKCELCQKEFTQKYSLNTHMLLHADSKPFKCDLCGKEFTQKGSLSSHMLSHSGAKPFKCELCQKEFTQKYSLNTHMLLHADSKPFKCDLCGKEFTLKASLSRHMLSHSGAKPFKCDLCPNEYTQKSHLTKHMLSHSGAKPFKCNVCRKEFKHKYSLNTHMLLHADSKPFKCDLCGKEFTQKGSLSSHTLSHSGAKPFKCELCRKEFTQKSSLNTHMLLHADSEPFMCDLCGKEFTQKATLSRHMLSHSGAKPFKCDLCPNEFTRKSYLATHMLSHIDAKPFKCELCQKEFMQKHSLNSHMLLHTNSKPFECDLCGKEFTQKATLSRHMLSHSGAKLFKCELCRKKFTQKSSLNTHMLLHADSKPFKCDLCGKDFTQKASLSSHMLSHSGAKPFKCDLCPNEYTRKSYLATHMLSHSDAKLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00283773;
90% Identity
iTF_00283773;
80% Identity
iTF_00283773;