Ccar056035.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000023.1:566990-599493[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-72 1.2e-67 230.2 31.3 1 202 16 223 16 252 0.82 2 4 3e-20 1.9e-15 58.7 1.6 188 279 241 330 231 340 0.80 3 4 8.8e-12 5.7e-07 30.9 0.1 274 300 364 390 348 390 0.86 4 4 0.011 7.3e+02 1.0 0.2 120 165 388 433 387 437 0.73
Sequence Information
- Coding Sequence
- ATGTCTGTCATTGTAAATGATCAACATTTCAGTTACATACTTTGGGCGGAGGCGAGGCTTGCTGCAAAAAGGCAAGCAAGGGCTGAAGCTCGAGAGATAAGGATGAGAGAGTTGGAAAGACAACAACGAGAGGCAGAGGAGAACAACGATAAGATATACGATATCTATAATACATCagATGCAATTAATAGGTCAAATCGTGTAGCCCAATCGATCGCCAGCCCGAGGTCATCAAGTGTGTTGTCTGGCGGAGGAAATAATAGTTACCATTCTTCAAGACGTAGTTCAGAAGATTCATTGGAAGAAACCAATAGCTTGCGTGATGTAAAGCAAGAATTGAAGGAGGTCGAAGATAAATTCAGAAAGGCGATGATTGCAAATGCCCAGCTGGATAACGAGAAAGCAGCTGCTGCATATCAGTTGGAATTGTATAAAGATCGGCTTGAAGAATTAGATGAGCAACATTCGCAATTGCAACGGGAACACAGGGAGAAATGTAGACAATTTGAAGCGTTAAAAAGGGCTACAGTGAAGTTACAAGAGGATATGGAATTCACGAGGGCACAGTTAGAAGAAAGAGATAGACTGATCGAGGAACAAGGTTTAGTAATAGTTGGCGGCGAGTACACTTCCAGTGATGAAGAAACGAGCGATAACGATCAAAAAAGTTCGAGTAAACtacataatcataataataataacaatcacaataataataataataacaattcatCCTTGAAACTGAAACACAAGAGGCCACCGAAAAGGGCTTTAGTTTCATCACAAGTGGCCGGTGCATTGCAACAAGTTGGTGAAGGCTCTCTAGATGTTCGATTAAAGAAGTTTGTTGAAAGCCGTAATGAATTGTTAGATGAATTGGGCCGAGTGAAATTAGAATTGGAAGAAGAAAGAGCACGCAATAGTAGGGGCCAAAGACATAGCACAGGAATCAACGGACCATCTGATGACTTTGAAGACATACAAAGAAACCTAATGACACGTCACATTAGGAGTCGTTATGCCTTACCCTACTTTTTTGACCAACCCGATGCCCAACCCATTGATCCGGACAGCAGTCTGCGGACACCAGTCTTTGTGCAAAGAGAGGCAAATAAATTGCTTGGTGATTATAAATTCAAATTGCAGAAAGCTGAACAGGACGTATCAACTTTACAAGCGAATgttGCTAGGTTAGAAAGTCAAGTTGTTAGATACAAATCAGCTGCAGAAGCAGCAGAAAAAGTTGAAGACGATTTGAAAGTGGAGAAAAGGAAATTACAAAGAGAGGCTGTTAAACTTGAGTACAGTGTAGCCAACTGA
- Protein Sequence
- MSVIVNDQHFSYILWAEARLAAKRQARAEAREIRMRELERQQREAEENNDKIYDIYNTSDAINRSNRVAQSIASPRSSSVLSGGGNNSYHSSRRSSEDSLEETNSLRDVKQELKEVEDKFRKAMIANAQLDNEKAAAAYQLELYKDRLEELDEQHSQLQREHREKCRQFEALKRATVKLQEDMEFTRAQLEERDRLIEEQGLVIVGGEYTSSDEETSDNDQKSSSKLHNHNNNNNHNNNNNNNSSLKLKHKRPPKRALVSSQVAGALQQVGEGSLDVRLKKFVESRNELLDELGRVKLELEEERARNSRGQRHSTGINGPSDDFEDIQRNLMTRHIRSRYALPYFFDQPDAQPIDPDSSLRTPVFVQREANKLLGDYKFKLQKAEQDVSTLQANVARLESQVVRYKSAAEAAEKVEDDLKVEKRKLQREAVKLEYSVAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -