Ccar042055.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000008.1:31875773-31876217[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.086 19 6.8 0.0 27 39 5 17 5 20 0.88 2 3 3.6e-18 8.1e-16 59.2 0.0 2 45 35 79 34 79 0.98 3 3 0.023 5.2 8.6 0.0 1 13 86 98 86 101 0.92
Sequence Information
- Coding Sequence
- atgaaatcggaagGCATACCAAGTAGTACGTTATACAAAATAGCGAGACGGGAAGGTATACGATTGGCCGCTCCATTTAATGCAGCGCCTACCACATGGAATCCTGATGATTTAGAAAGAGCGTTAGAAGCGATTAGATCAGGCCAAACGACCGTTCAGAAGGCATCGGCTGAATACGGAATACCATCTGGTACCCTTTACGGAAGGTGTAAACGTGAAGGTATCGAACTATCGCGGAGTAACCCTACACCATGGTCGGAGGATGCGATGAACGAAGCTCTTGAATCTGTCaggtatttaaaacaataa
- Protein Sequence
- MKSEGIPSSTLYKIARREGIRLAAPFNAAPTTWNPDDLERALEAIRSGQTTVQKASAEYGIPSGTLYGRCKREGIELSRSNPTPWSEDAMNEALESVRYLKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00958606;
- 90% Identity
- -
- 80% Identity
- -