Basic Information

Gene Symbol
spr-4
Assembly
GCA_963564715.1
Location
OY751331.1:19235630-19240307[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.2 24 7.0 3.4 2 22 186 206 185 206 0.95
2 15 0.084 9.9 8.2 2.6 1 23 304 326 304 326 0.95
3 15 0.37 44 6.2 0.3 2 23 464 485 463 485 0.96
4 15 0.0045 0.52 12.2 0.5 2 23 562 583 561 583 0.96
5 15 0.061 7.2 8.6 0.4 1 23 591 613 591 613 0.98
6 15 0.12 14 7.8 3.4 1 23 647 669 647 669 0.95
7 15 0.00024 0.028 16.2 4.0 1 23 677 699 677 699 0.99
8 15 0.1 12 7.9 1.9 1 23 786 808 786 808 0.99
9 15 1.6 1.9e+02 4.1 0.0 2 23 893 914 892 914 0.97
10 15 0.025 2.9 9.8 0.7 1 23 981 1003 981 1003 0.96
11 15 0.0049 0.58 12.1 1.1 1 23 1009 1031 1009 1031 0.96
12 15 0.0066 0.77 11.7 2.6 1 23 1121 1143 1121 1143 0.97
13 15 0.00016 0.019 16.7 1.4 1 23 1149 1171 1149 1171 0.99
14 15 3.6 4.2e+02 3.1 1.7 5 23 1267 1285 1263 1285 0.84
15 15 0.0092 1.1 11.2 5.8 1 23 1296 1318 1296 1318 0.98

Sequence Information

Coding Sequence
ATGGGGCTACAATACGCAGAAAGAGAACTTGTCAGTTGTAAAAGCGACTCAAATGATGGGACGCCTTCTGATGGTATTAGCAAAAAAGACAGTCCAGGCTCACCTAACCACAGTTCAGatgaatcaaaacaaaaacagtgTAGGAAAATACCACGACCAATACCACAACTCATACCGTTGAATTCCTCCACCCCCAACCAAAAACAAACAGCCAGTGGTGAACCGCCACAGAAAAAGTTTAAGGAATCTTCACCAGTAGATTTAACCGATTCCAATTCAGGAAGCAGAATAGAGCATCTATCCGGCGATATCACATTAATTCCTGTTAATAGCAATCCCTCTGCAAAAGAACCCGGTCGTAAGAAAAATGAATCATTTTTTGACAGATTAAAAGAAAGATTATTAACTGAAACTGGAGAAAAAGGATCACTTATATGTAAAAATTGCGGATTTGAAAGTAAATGTTTATCAGAACATTCTGTGCATGAGAAAAACTGCACGCCTCAATCCAACCGAATCACTACAAATACGTCGCATTCAAGTTTGAGTTCGACTCGATGCCAGAATTGCAGACATAGATGTAAATCAAGTGCCGACTTATACATTCACATGCAAACTTGCGGTAAGAGCGAAAAGGCTGACGACAATAGCGCAGAAACTAAAAATGATGATAGTAACGATACATCCATTCCAAGTCAAGAAAAAGAGAGTGAGCGGCATCCCATGGAAAACGTTGTTTTCGTGTGGAACAACATAAACCAAGATACTAACAAATTCGATGTACCACTAGACATCAACATAAACGATGACTCTACTCTACCAGAAACAAATAGAAACTTCGATATCGAGATCGTTGATGAGAATGAAACTATGAATCTATCACCAAGTCAAGCAATCGGAAGAAAAGTTTTTAAATGTCCACATTGTCCATTTTTCTCAACAACCGCATCCAGATTTCATGTTCATATAGTTGGTCACTTAAATAAAAAGCCGTTTGAATGTTCCCTTTGCAAATATAAATCGAATTGGAGGTGGGATATCACCAAACACATTAAACTGAAATCCGCTAGAGATCCAGAACATAATGACGCTAAGGTACTAATGACTGATGAGACAGGAAGAAGAAATTATAGCAAGTATAACAAATTCTTGGCTATGCCAGTATTGAATGAGTATGGAGAAAACGAGTTTCACTATCTGGATTCTAGCACAGTTGAGGGGACAATGGAACTAGATGATTCTTTTCATGACATGTCAGATGTTATGAATACGCAATATGAAATGCAACCACTCAATCTACAGACTCAACACAGTGATGATAAGTACGACATGCTTGACAGCAGAGGTTTGCATCTAAATGATATGAAGAAACCTAAGAAAACGCTATGGAAATGTAAAAAATGCAATTACAAAGATCCATCAAAAGACGCTCTCCTGGAACACGTTCGTGAACACTCAAAGGATGGTGTCCATGAAGAACCCCACAAGCCTGCTGTTGCAAAAAAGTCAGAAAACGCTCCTGACCCAGCAGACTTGGCATATCGTTGTGGTCACTGCCATCAATTATCTAATTGGAAACATGTGATCCAGCGACACTGCCGTTTGAAACACGATGGAATAATAAAAGTGATAACAACAGTGAAACCAAAACCTGACCCGGTTAACATAAACGATATCAACGACATGTGTAACAAATGTCCATTCAGAACAAGTGACAAGAAACTGCTCATCGCCCACCTGCAGCAACATCAGCCATCACCACAATCTATATTCAAATGCTACTTCTGTCCATTCTTCGTGAAAGATGAACAGGAGTTAGCCCAACATCTCCTCATTCACGGCATAACCGAACCCGAAGATTATATTTCTAAAGCAATGGGTGGTAAATCCCCATTACGAGAGCAGCAAGCGATTACATCTATATGTACAACCAAGCGTCATAGATGCACCGAATGCCCGTACGAAACAAATAGTAAGTCACAATTTATGTACCACGAGCAATTTCACCGCACACCGGCGGACACGCCATACAAATGTCCAGAATGCAACTATAGTGTTTCTAAGAGACATCTCCTGCACCAACATTTAAGAGTTCATGGTATAATCACGAAAAGACTAGACGCGGAGTACGGAATAGAACAACCATCAACATCATCTCAGAACAAAATCGACATTAAAACCGAATCTCAAACACACTTCTTGGAGGAGATACCTTTTGTTTGGGTCTCTGCAAAGAATGAGTtccataaaatgtataaatgtagATATTGTTCATATGTTAACTCTCAAAAATGTAAAATTCCAAATCACGAGAAAATTCATTGTATCGTTTTTGAAAACAATGAAACTACAATTTACAAGTGTCTTGAATGTAAATTCACATGTGATAATGCTGGTAGACTTGCTGAACACTCTAAAACACACGGTGAAATATATGGTCGCATTTACTGCCCCGTTGAAGACGACGTTCCAGATGAGGAGCAAATATCTAAACTAAGGAAAGTTATAGAAATGGATAAGTTTAGTAATGCAGAAAATGTATCTAAAGAAGAAGGTTTAGTTAACGAAAGCAGAGAGATAAAGCTCCTTTATTTTTGTCATAAGTGTCCAGCAAGATTTCTCGAAGATATTGAATTACAGAGTCACGACAAATTCCATGATTTAACATTTtcgaataaatgtaaaagttgtGAGTTTTCGGTGCCGGAAGAAAATGAATTAGCGGCACATGTAATGGTTCATACGGATGAATATCACACAAAAACTAAAATGCttaaatttatacataactCACATCCGTCTCATAGAGAACCTAGATTGGAGCTCGCACATTGTCCAACTAATTCTGAAATCACTTGGATAGTTGGAGAACCAAGTATAATCGAGAATGTTGAGAGTCGTATGAAAAAATCAAATGAATCGAAACACGTGCCAAAGCAATATTATTGTAGATTGTGTCCAGCGAAGTTTTTCAAAAGTTCAGCACTTAGTTATCACATGGGATTGCATGGAGGAGAAGGAGAACATAAATGCAAGAAATGTAATTATGCCGTAAAGAACGTAGGGAACTTAGCTAAACATGAATTATTACATGAAAATGATAACAAGTCAACAAATTGTGATTATGAGTCTGGAGAAGATATGGACTATAAAAATATTCCACTATCAGGTACAGACTTGTTCCAGAGAAAGACTGAGGCACAGAAAAGAGTGTTAACTGATAAAGATAAATTAGTTAAGCCAAATGATCATTTTCCGCCTGTTTTACAAGCTGATCCACAATTCGGATATTTAATGCACGGTAATCCTGAATTTATATAtcctacttatttaaaaaacggaCGCCAGAAAGAAAAACGTTATAAATGTCACAAGTGCCCTTCAGCGTTTGAGAAAAGAGAACAATATAAAATCCATTTATCGTTACATGGTTCGAAACAAAGATATAAGTGTGAATTATGTGATTATTCTGTTAAATATTATGCTAATTACGTCCAACATATGAGGAAACATCAAATGAATGATGAAGCACAagcagaaagaaagaaaggtaACAACGGTTTTATACTATCAGAAAACCCAGAGGACGTGAAACATGAAGATAGTACAGATAACATTAAACTAGCAATCAAGACAATGCCAAGAGGACCCCCGAAAAGCGATTTCCAGCAATTCTCAATCAGTGATCAGCAAACCCTTCGCCTGCTACAGCGAAGGCGCTCGATAAACAACTGTGGTAAGGACATGGGCATGTCTGAAACTTCGCCGACGAAAGAGCGCAAAGTGCATATGTGTATATTGTGTCCTTATACAAATCAACGTCAGGATTCCTTGATTAACCACTACAGGAGACATGGCaataatgatgtaattaatgGCGGTAATCACAAATGTACTCATTGTGATCTAGTAGTTGTACAGTCACATTTCCTTCGGGAACATTTGAAAACACACTTTAATTATCATAAGACTCTTACACCCGATTGTTTCGTTGCGAATGAAGACGTTAGTTTTACTGTAACTAAGTTGGAAGATGAAGGTAGTGAGCCTGTTGATCTCAAATTAGACATGCAAAACAAGGGTTTCGTATGTAACGACAGCAagatatttgttaaaattaagaCAGGAGAACTGTTGGTAGAGTGA
Protein Sequence
MGLQYAERELVSCKSDSNDGTPSDGISKKDSPGSPNHSSDESKQKQCRKIPRPIPQLIPLNSSTPNQKQTASGEPPQKKFKESSPVDLTDSNSGSRIEHLSGDITLIPVNSNPSAKEPGRKKNESFFDRLKERLLTETGEKGSLICKNCGFESKCLSEHSVHEKNCTPQSNRITTNTSHSSLSSTRCQNCRHRCKSSADLYIHMQTCGKSEKADDNSAETKNDDSNDTSIPSQEKESERHPMENVVFVWNNINQDTNKFDVPLDININDDSTLPETNRNFDIEIVDENETMNLSPSQAIGRKVFKCPHCPFFSTTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPVLNEYGENEFHYLDSSTVEGTMELDDSFHDMSDVMNTQYEMQPLNLQTQHSDDKYDMLDSRGLHLNDMKKPKKTLWKCKKCNYKDPSKDALLEHVREHSKDGVHEEPHKPAVAKKSENAPDPADLAYRCGHCHQLSNWKHVIQRHCRLKHDGIIKVITTVKPKPDPVNINDINDMCNKCPFRTSDKKLLIAHLQQHQPSPQSIFKCYFCPFFVKDEQELAQHLLIHGITEPEDYISKAMGGKSPLREQQAITSICTTKRHRCTECPYETNSKSQFMYHEQFHRTPADTPYKCPECNYSVSKRHLLHQHLRVHGIITKRLDAEYGIEQPSTSSQNKIDIKTESQTHFLEEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENNETTIYKCLECKFTCDNAGRLAEHSKTHGEIYGRIYCPVEDDVPDEEQISKLRKVIEMDKFSNAENVSKEEGLVNESREIKLLYFCHKCPARFLEDIELQSHDKFHDLTFSNKCKSCEFSVPEENELAAHVMVHTDEYHTKTKMLKFIHNSHPSHREPRLELAHCPTNSEITWIVGEPSIIENVESRMKKSNESKHVPKQYYCRLCPAKFFKSSALSYHMGLHGGEGEHKCKKCNYAVKNVGNLAKHELLHENDNKSTNCDYESGEDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGNNGFILSENPEDVKHEDSTDNIKLAIKTMPRGPPKSDFQQFSISDQQTLRLLQRRRSINNCGKDMGMSETSPTKERKVHMCILCPYTNQRQDSLINHYRRHGNNDVINGGNHKCTHCDLVVVQSHFLREHLKTHFNYHKTLTPDCFVANEDVSFTVTKLEDEGSEPVDLKLDMQNKGFVCNDSKIFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00795310;
90% Identity
iTF_00281859; iTF_00678106;
80% Identity
-