Cspo037457.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751353.1:1036239-1040978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0029 0.34 12.8 1.1 1 23 32 55 32 55 0.89 2 19 0.082 9.6 8.2 0.5 2 23 83 105 82 105 0.94 3 19 8.5 1e+03 1.9 7.0 3 23 129 149 127 149 0.95 4 19 0.18 21 7.2 3.7 1 19 153 171 153 175 0.95 5 19 0.045 5.3 9.0 5.9 1 23 180 203 180 203 0.95 6 19 0.023 2.7 9.9 1.3 1 23 210 233 210 233 0.88 7 19 0.00094 0.11 14.3 1.4 1 23 239 262 239 262 0.98 8 19 0.00083 0.098 14.5 2.2 1 23 268 290 268 290 0.97 9 19 3.7e-06 0.00043 21.9 1.0 1 23 296 318 296 318 0.99 10 19 0.0075 0.88 11.5 0.2 1 23 394 417 394 417 0.93 11 19 2.3 2.7e+02 3.7 0.1 3 23 449 470 447 470 0.93 12 19 3.2 3.7e+02 3.2 4.5 2 23 493 514 492 514 0.96 13 19 0.00063 0.074 14.9 0.1 1 23 518 540 518 540 0.98 14 19 0.0081 0.95 11.4 1.0 1 23 545 568 545 568 0.96 15 19 0.13 16 7.5 0.5 2 23 576 598 576 598 0.95 16 19 6.3e-06 0.00074 21.2 2.0 1 23 605 628 605 628 0.98 17 19 0.0055 0.65 11.9 4.7 1 23 634 656 634 656 0.96 18 19 3.7e-05 0.0044 18.7 3.0 1 23 662 684 662 684 0.99 19 19 0.00015 0.017 16.9 5.4 1 23 690 713 690 713 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAGGCGATTAAGAAAACTCAGCATAACCTTGCACAGATACTTACATTTACTAACGCGACGCCAATACTTCGACAAGCTGACGTCGGCTATTTTTGCTACTTCTGCGATGCTTACTTTCGTGATCCAGCCAACctaaaaaaacataacatacaatCACATAAAGATCAGTCTAAGATAGGCAAATCATGGGTTAAAAAAAAGGATAAGGCATATTGCGTGAAGCTAGATATCACTGGATTAAATTGCAAACTTTGTAAATATGATATCGATTcgttagataatttatttaaccatTTAAAGAATGATCACAAAAAAGCAATTCATACGGATGTCAAGAACCTCATTGTACCATTTAAGTTTGACAGTGATGCTATTTGCTGCTGTATATGTACAAACGTTTACGAAAAGTTCAAGAAGTTAATGGAACATATGCACACACATTACAGAAATTATATCTGCGATGTCTGTGATCATGGTTTTGTGACTCAAGATTGTCTGGACAATCATTCAGAGTGTCACAAAGTAGGTAGTTTTAAATGTGACTTTTGCCACAAAACATTTAACACActacaaaagaaaaagaatcacgaaaaaaatgttCATAAACAAAATCATACGAAATATAGATGCGGTTATTGTAACGAACGGTTCAGGAAATCTCGTCTGAAAGATGAACATTTATCAAGCGTGCACGGAGTAACGTTCAATTTTAAATGTCGAGCTTGCGACAGAACTTTTAGGATTAGAAGAGCTTTGACTATTCATACAAGAAGAGATCATTTAATGGAAAGGAATTTTAAATGTTCCCAATGTGATATGAAATTCTTTTCTTTTGATGAATTGAATAAACATGGCTTAAAACATTCAGGCGTGAAGGAGTTCAAATGCGATGTTTGTTTAAAGTCTTATGCAAGAAAGACCACTTTAACAGAGCACATGCGAATACACAACGACGAGAGACGGTTCAAGTGTATCCAAGAAAAAGTCAAATCGGAAAGCGAATATCTAGAACCATTGGTAAAACATGAAACTGAAGAggacagtaaaataattaagagtAAATTAAACTCTAAAAAGAACGTGAAAATAGAATTTGAGAAACATTTGCATAACCTGaaagagattttaaaatatactaatgCGACTCCGATATTCAAGCAGGGAGGCATCGGCTACATGTGCAGTTTTTGTCCTGGCCAGTTTCCGAAACCAGAGGAATTAAAAAAGCATACTTTAGCAAATCATGTTGGTCAAACTAACGTCAAGGTTAGTTCTACCTCAAGCACCAGAATGGGCATTTACAGATATTCTATCAGGCTCGACATTACAAATCTGAATTGCTTGCTTTGTGATACTTATATAGAGTCTCTTGAAGGTCTGATGGTGCATCTAAGggaaaaacacaataaagtaATACACACAGATATAAACAATCATATTATTCCCTTTAAGTTTGAAACAGACCAGCTGACTTGTTGCTTATGTCCAAATACGTTTGAGCGGTTCAAGATTTTGCAAGAACATATGCATAGACACTACAGAAATTATATTTGTGAAGTATGTGATGCTGGATTCATCAATCAGGGTAGTTTGAGCAGTCACGCACATACACACGTGAAAGGAACCTTCCCATGTAATTTTTGTCCTAAAGTATTTGATACTATTACCAAGAAAAAGATGCATGTAAGATCAAGCCACACCCACCGAAATGTGGTGAATCGATGTGGATACTGTAATGAAGGATTCAGAGAGTATTACATGAAAGAACAGCATTTATCCAAAGTTCATGGTGTCAACAATACAGCTTTTAAATGCAACGCATGTGAAAAATCATTTACTACGCCTAAGAAATTAAGAACGCATATAAAGAAGGACCATCTATTAGAAAGGCAGCACAATTGTTCTCTATGTGAGATGAAATTTTACCGTCTCCATGACCTTACGCAGCACATGGTGAAACATACGGGCGTCAAGAAGTTTCAATGTGAAGTATGTTTGAAGTGTTATGGAAGGAAGAAGACTTTGACAGAACACATGAGAATACACAATGACGATCGGCGCTTCAAGTGTGAACATTGTGGACAGGCGTTCGTGCAAAAATGTAGCTGGAAAACACATATGAAAAATAGACACGGAGAGATTGTATCTTAA
- Protein Sequence
- MKEAIKKTQHNLAQILTFTNATPILRQADVGYFCYFCDAYFRDPANLKKHNIQSHKDQSKIGKSWVKKKDKAYCVKLDITGLNCKLCKYDIDSLDNLFNHLKNDHKKAIHTDVKNLIVPFKFDSDAICCCICTNVYEKFKKLMEHMHTHYRNYICDVCDHGFVTQDCLDNHSECHKVGSFKCDFCHKTFNTLQKKKNHEKNVHKQNHTKYRCGYCNERFRKSRLKDEHLSSVHGVTFNFKCRACDRTFRIRRALTIHTRRDHLMERNFKCSQCDMKFFSFDELNKHGLKHSGVKEFKCDVCLKSYARKTTLTEHMRIHNDERRFKCIQEKVKSESEYLEPLVKHETEEDSKIIKSKLNSKKNVKIEFEKHLHNLKEILKYTNATPIFKQGGIGYMCSFCPGQFPKPEELKKHTLANHVGQTNVKVSSTSSTRMGIYRYSIRLDITNLNCLLCDTYIESLEGLMVHLREKHNKVIHTDINNHIIPFKFETDQLTCCLCPNTFERFKILQEHMHRHYRNYICEVCDAGFINQGSLSSHAHTHVKGTFPCNFCPKVFDTITKKKMHVRSSHTHRNVVNRCGYCNEGFREYYMKEQHLSKVHGVNNTAFKCNACEKSFTTPKKLRTHIKKDHLLERQHNCSLCEMKFYRLHDLTQHMVKHTGVKKFQCEVCLKCYGRKKTLTEHMRIHNDDRRFKCEHCGQAFVQKCSWKTHMKNRHGEIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281627;
- 90% Identity
- iTF_00281627;
- 80% Identity
- -