Cnup053635.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776106.1:12991022-12995758[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.25 45 6.5 0.6 1 19 27 46 27 50 0.87 2 21 0.00027 0.048 15.9 0.2 1 23 56 78 56 78 0.99 3 21 0.0031 0.55 12.6 1.1 1 23 148 171 148 171 0.89 4 21 0.087 15 8.0 0.5 2 23 199 221 198 221 0.94 5 21 1.1 1.9e+02 4.6 4.9 2 23 244 265 243 265 0.97 6 21 0.0062 1.1 11.6 1.5 1 23 269 291 269 291 0.95 7 21 0.022 3.8 9.9 5.0 1 23 296 319 296 319 0.95 8 21 0.037 6.4 9.2 1.2 1 23 326 349 326 349 0.84 9 21 0.00097 0.17 14.1 2.1 1 23 355 378 355 378 0.98 10 21 0.0009 0.16 14.3 2.2 1 23 384 406 384 406 0.97 11 21 2.8e-06 0.00049 22.1 0.5 1 23 412 434 412 434 0.99 12 21 0.0081 1.4 11.3 0.2 1 23 512 535 512 535 0.93 13 21 0.61 1.1e+02 5.4 0.1 2 23 566 588 565 588 0.94 14 21 3.4 6e+02 3.0 4.5 2 23 611 632 610 632 0.96 15 21 0.00068 0.12 14.6 0.1 1 23 636 658 636 658 0.98 16 21 0.0088 1.5 11.1 1.0 1 23 663 686 663 686 0.96 17 21 0.15 25 7.3 0.5 2 23 694 716 694 716 0.95 18 21 6.8e-06 0.0012 20.9 2.0 1 23 723 746 723 746 0.98 19 21 0.0059 1 11.7 4.7 1 23 752 774 752 774 0.96 20 21 4e-05 0.007 18.5 3.0 1 23 780 802 780 802 0.99 21 21 5.9e-05 0.01 18.0 4.4 1 23 808 831 808 831 0.97
Sequence Information
- Coding Sequence
- ATGCGCTTGCGTCAAAACTTTCAGACTGAGAAGTTCTTGGCTATACATACGAGAAGAGATCATTTCATGGAAAGAAAGTTCATGTGCACTCAATGTGATATGAAGTTTTTTCCCCCATCATCTGATTTAAAAATGCATGACTTAAAGCATTCGGGATTGAAGGAGTTCCAATGTGTCATATGCCCAATATCTTATGGAAGGAAGAAAACCATAAACGAGCACATGAGAATACACAATGATGAGAGACGTTTCAAGTGTGAGAGCTGTGGTGATGACGACATACCCATCAAAACTGAAAGAAATGTGAACCTTGGAAAGGCAAATAATACTAAAACGAAGCTTAAAGAAATGAAAGAGGCGATTAAGAAAACTCAGTATAACCTTGCACAGATACTTACATGTACTAATGCAACGCCAATACTTCGACAAGCTGACGTCGGCTATTTTTGCTACTTCTGCGATGCTTACTTTCGTGATCCGGCCAacctaaaaaaacataatatacaatCACACAAAGATCAGTCTAAGATAGGCAAATCATGggtaaaaaaaaaggataaagCATATTGTGTGAAGCTAGATATCACTGGATTAAATTGCAAGCTTTGTAAATATGATATCGATTcgttagataatttatttaaccatTTAAAGAATGAACACAAAAAAGCAATTCATACGGATGTCAAGAACCTCATTGTACCATTTAAGTTTGACAGTGATGCGATTCGCTGCTGTATATGTACAAACGTTTACGAAAAGTTCAAGAAATTAATGGAACATATGCACACACATTACAGAAATTATATCTGCGATGTCTGTGATCATGGTTTTGTGACTCAGGATTGTCTAGACAATCATTCGGAGAGTCACAAAGTAGGTAGTTTTAAATGTGACTTGTGTCACAAAACTTTTAACACACTACAGAAGAAAAagaatcacgaaaaaaatgttcataaacaaaatcatacaaaatatagatGCGGTTATTGTAACGAACGGTTCAGGAAATCTCGTCTGAAAGACGAACATTTATCTAACGTGCACGGAGTAACGTTCAATTTTAAATGTCGAGCTTGCGACCGAACTTTTCGGATTAGAAGATCTTTGACTATTCATACAAGAAGAGATCACTTAATGGAGAGGAATTTCAAATGTTCCCAATGTGATATGAAATTCTTTTCTTTTGATGAGTTAAATAAGCATGGCTTAAAGCATTCAGGTGTGAAGGAGTTCAAATGTGATGTTTGTTTAAAGTCTTATGCGAGAAAGGCAACTTTAACAGAGCACATGCGGATACATAATGATGAGAGACGGTTCAAGTGTATCCAAGAAAAAGTGAAAGTCAAATCGGAAAGCGAATATCTAGAACCATTGGTAAAATATGAAACTGAAGAGGacagtaaaaaaattaagagtAAATTAAACTCTAAAAAGAACGTGAAAATAGAATTTGAGAAACACTTGCATAATCTGaaagagattttaaaatatactaatgcGACTCCGATATTCAAGCAGGGAGGCATCGGCTACATGTGCAGTTTTTGTCCTGGCCAGTTTCCGAAACCAGAGGAATTAAAAAAGCATACTTTAGCAAATCATGTTGGTCAAACTAACGTCAAGGTTAGTTCTACCTCAAGCACCAGAATGGGCATTTACAGATATTCTATCAGACTCGACATTACAAATCTGAATTGCTTGCTCTGTGATACTAACATAAATTCTCTCGAAGGTTTGATGGTGCATCTAAGggaaaaacacaataaagtaATACACACAGATATAAACAATCATATTATTCCCTTTAAGTTTGAAACAGACCAGCTGACTTGTTGCTTATGTCCAAATACGTTTGAGCGATTCAAGATTTTGCAAGAACATATGCATAGACACTACAGAAATTATATTTGTGAAGTATGTGATGCTGGATTTATCAATCAGGGTAGTTTGAGCAGTCACGCACATACACACGTGAAAGGAACCTTCCCATGTAATTTTTGTCCTAAAGTATTTGATACTATTACCAAGAAAAAGATGCATGTAAGATCAAGCCACACCCACCGGAACGTGGTGAATCGATGTGGATACTGCAATGAAGGATTCAGAGAGTATTATATGAAAGAACAGCATTTATCAAAAGTTCATGGTGTCAACAATACAGTTTTTAAATGCAACGCTTGTGAAAAATCATTTACTACGCCTAAGAAATTAAGAACGCATATAAAGAAGGATCATCTATTAGAAAGGCAGCACAATTGTTCTTTATGTGAGATGAAATTTTACCGTCTCCATGACCTTACGCAGCACATGGTGAAACATACGGGAGTCAAGAAGTTTCAATGTGAAGTATGTTTGAAGTGTTATGGAAGGAAGAAGACTTTGACAGAACACATGAGAATACACAATGACGATCGGCGCTTCAAGTGTGAACATTGTGGACAGGCGTTCGTGCAAAAGTGTAGCTGGAAAGCACACATGAAAAATAGACACGGGGAGATTGTATCTTAA
- Protein Sequence
- MRLRQNFQTEKFLAIHTRRDHFMERKFMCTQCDMKFFPPSSDLKMHDLKHSGLKEFQCVICPISYGRKKTINEHMRIHNDERRFKCESCGDDDIPIKTERNVNLGKANNTKTKLKEMKEAIKKTQYNLAQILTCTNATPILRQADVGYFCYFCDAYFRDPANLKKHNIQSHKDQSKIGKSWVKKKDKAYCVKLDITGLNCKLCKYDIDSLDNLFNHLKNEHKKAIHTDVKNLIVPFKFDSDAIRCCICTNVYEKFKKLMEHMHTHYRNYICDVCDHGFVTQDCLDNHSESHKVGSFKCDLCHKTFNTLQKKKNHEKNVHKQNHTKYRCGYCNERFRKSRLKDEHLSNVHGVTFNFKCRACDRTFRIRRSLTIHTRRDHLMERNFKCSQCDMKFFSFDELNKHGLKHSGVKEFKCDVCLKSYARKATLTEHMRIHNDERRFKCIQEKVKVKSESEYLEPLVKYETEEDSKKIKSKLNSKKNVKIEFEKHLHNLKEILKYTNATPIFKQGGIGYMCSFCPGQFPKPEELKKHTLANHVGQTNVKVSSTSSTRMGIYRYSIRLDITNLNCLLCDTNINSLEGLMVHLREKHNKVIHTDINNHIIPFKFETDQLTCCLCPNTFERFKILQEHMHRHYRNYICEVCDAGFINQGSLSSHAHTHVKGTFPCNFCPKVFDTITKKKMHVRSSHTHRNVVNRCGYCNEGFREYYMKEQHLSKVHGVNNTVFKCNACEKSFTTPKKLRTHIKKDHLLERQHNCSLCEMKFYRLHDLTQHMVKHTGVKKFQCEVCLKCYGRKKTLTEHMRIHNDDRRFKCEHCGQAFVQKCSWKAHMKNRHGEIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282666;
- 90% Identity
- iTF_00282666;
- 80% Identity
- -