Cspo009033.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- Rfx2
- Assembly
- GCA_963564715.1
- Location
- OY751330.1:28253723-28286583[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0079 1.9e+02 4.1 0.0 3 26 224 248 222 255 0.83 2 3 1.7e-36 4.1e-32 112.0 0.1 6 78 270 342 265 343 0.97 3 3 1.6 3.7e+04 -3.3 0.0 24 32 720 728 706 734 0.68
Sequence Information
- Coding Sequence
- ATGAGTGAAGCAAAATCAATAGAATGTACTGATGATGATGCCAACAACTCGGTGTTAATTTTTGAAGTAGACTGCTTCGaagATTTTGAGTGCGCCGGCGACGAAGTATTAGTGGAATCGTCGCCGCCCGCTTCGCCCGACATGGCTGCGAGGCTTGCGGCTCCCACGCAGGGTGGCACCGCGGCGGGCGGTACGTCGCCGACCGCAGTGCGTGAGCTGATCGTCATTCCAGAATTACCTAACTCTATACATTTGCAGCACGCCATGCAACAGGTGACGAGCACCGTGGTGGAGGTGAATGGCGATAGCTCAGGTCACTCCAGTCCTACCGCTGAGGGACAGCACACATATATCACTGTAGCCAGCGAGTCGCTCGGCGAGGGTGGCAACGGCGTCAACTACCATGTGCAGTATGTCACTGAACCTCAGGAAATTTACACACAAGGTCATCAGACCcatatGGAAACTCTCCGCTCATACCCGGTGTACGGAGTGACCACCGTCGCCAACGGAAGCAACGCGGAGGGCACGTCGGGCGACAACGGCTGGGGCGGCGCGTCGTCCGCCGAGTACACGGCTTATGGCGTTGTTGTGGCAGGCGACGAGGCCGAGGCTCCGGCCTCGCCCGCCACGCCGGCgggtgcgcccgcgccgccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACTGCCGAAGGTGACGTATCATGtaactatacatacatttacattacTTTATACATACGCCGCCCGCCACCGTGCAGTTGCTGCTCGACAACTACGAGACTGCCGAAGTGGCTGCTCGACAACTACGAGACTGCCGAAGGTGTATCTCTGCCGCGCTCGACCCTGTACGCGCACTACCTGCGGCACTGCGCCACGCACCGCCTGGAGCCCGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCGTCGGACTGAGGACCCGGCGCCTCGGCACCCGGGGGAACTCCAAGTACCACTACTACGGGATTCGGGCCAAGCCTGGCATTGACCAGGACCACGGCGACATGAGGGATGAGGCCCCAGACCAGCATGATAATGTTGATGACAAGACAGATGTGGTGGACCATCAGGAGGGCAGGTCTCGTGAGCGCGCTCGCGCCACTAGCCCCACAGCTAACCAGCACCGGCAGTACTTGGGAGCGGCGGCGCCGCCTGAGCCGCCGCCGCTGTCCATCGTCGACCTGCCCGAGGATGTGCCTCACGAAGCGTTAGATGCTCTGCGACGACACCACAGGGAACATGGCGTCGAGTTCTTGGAGGCGGTGGCAGCTCTGGACATCGGTGCGGTAGAACGCGCGCGGCGCGCGTTCTGGCGGCGCCCCCCCACGGCATTGTGCCGCCGCGTGCTGTGCAAGCTGACGGCGCGCCGCGACGTGGCCGCCTGGCTGCGCCTCGCCGAGCTACAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCCGCCGCAGCTGACACAGCTGACGGCGCGCCGCGACGTGGCCGCCTGGCTGCGCCTCGCCGAGCTACAGCTGTACCAGCGCGCCGTGGAGCTGCTGCTGCCCGACGTGCTGCGGCCCATCCCGCCGCAGCTGACACAGTCGATTCGCAACTTCGCCAAGAGCCTGGAGGGCGCGCtggcggcgggcgcgggcggcgcgccgGCGCCCGCAGCGCGCGCGCAGGCGGCGGCGGCCGCGGCGCTGGCGGCTGCGCTGCGCCGCTACACGTCGCTCAACCACCTGGCGCAGGCCGCCCGCGCCGTGCTCACCAACCACCATCAGATACACCAGATGCTCGCAGATCTAAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCGGCCTGGGCGTGCTCGTGCGGCAGCGCCACCACCGCACACAAACTTGAAGCGGACTTcaagGCGACGCTAGGCCGCGGCGCGTCGCTGGAGCAGTGGGCCGGCTGGCTGGAGAGCTGCGTGCGCACGGCGCTGGCCCCGCACGAGCGCCGCGCGGACTACAcggcgcgcgcgcgccgcctgCTGCTGGACTGGTCGTTCTACTCCTCGCTCGTCATCAGGGAGCTCACTCTCAGgTCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGCCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCGCGTGGCCGCGCACCACGACGTGCCCTGCATCGCCGTCATGCAGAGGGTCCTCGAACAACCGGAAGAAGAAGAAATCCCCGTTGAGGATCCGCTTCGCGCCGACCCTGACGATGATGACCAGGATTGGGAGTGGGAAGACGAAGAAGAAGAGGATGATGAGCCTGAATGCAAGAAGACTAGGGCTGGGGAGTAA
- Protein Sequence
- MSEAKSIECTDDDANNSVLIFEVDCFEDFECAGDEVLVESSPPASPDMAARLAAPTQGGTAAGGTSPTAVRELIVIPELPNSIHLQHAMQQVTSTVVEVNGDSSGHSSPTAEGQHTYITVASESLGEGGNGVNYHVQYVTEPQEIYTQGHQTHMETLRSYPVYGVTTVANGSNAEGTSGDNGWGGASSAEYTAYGVVVAGDEAEAPASPATPAGAPAPPRMPPATVQWLLDNYETAEGDVSCNYTYIYITLYIRRPPPCSCCSTTTRLPKWLLDNYETAEGVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPGIDQDHGDMRDEAPDQHDNVDDKTDVVDHQEGRSRERARATSPTANQHRQYLGAAAPPEPPPLSIVDLPEDVPHEALDALRRHHREHGVEFLEAVAALDIGAVERARRAFWRRPPTALCRRVLCKLTARRDVAAWLRLAELQLYQRAVELLLPDVLRPIPPQLTQLTARRDVAAWLRLAELQLYQRAVELLLPDVLRPIPPQLTQSIRNFAKSLEGALAAGAGGAPAPAARAQAAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQMLADLNRVDFRVVREQAAWACSCGSATTAHKLEADFKATLGRGASLEQWAGWLESCVRTALAPHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHHDVPCIAVMQRVLEQPEEEEIPVEDPLRADPDDDDQDWEWEDEEEEDDEPECKKTRAGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869360;
- 90% Identity
- -
- 80% Identity
- -