Cnig048154.1
Basic Information
- Insect
- Cataglyphis niger
- Gene Symbol
- -
- Assembly
- GCA_004329405.1
- Location
- SJPC01005389.1:4295-7448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 7.2 9.1 0.1 3 23 449 471 447 471 0.94 2 10 0.00088 0.61 12.5 1.4 1 23 477 501 477 501 0.98 3 10 0.00035 0.24 13.8 0.9 1 23 507 531 507 531 0.94 4 10 0.00013 0.09 15.1 0.2 3 23 539 561 537 561 0.92 5 10 2.5e-05 0.018 17.3 1.7 1 23 568 592 568 592 0.97 6 10 0.0001 0.073 15.4 0.7 2 23 600 623 599 623 0.95 7 10 1.8e-05 0.013 17.8 4.9 1 23 629 653 629 653 0.97 8 10 2.8e-06 0.002 20.3 0.6 1 23 659 683 659 683 0.96 9 10 2.8e-05 0.019 17.2 0.9 1 23 689 711 689 711 0.99 10 10 0.17 1.2e+02 5.3 0.1 1 23 798 823 798 823 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGCAGAGGAGCCGCCGCCATCGTCGCCTGCACGTCGAGACGACGCAGTCGAGAGAAAATTGGCTCCGAGGGAACGGAATGCGTGCCCTCTGACACGCTCTTTGCCCCGTCGAAGACGGAGGGGATCGCTAAAAAGGATAGAAGAATTAGGAAAAATGAAGCTTGGCATCAGACGACGGTCAGCAAGAGCGCCGACGTCGTCGAGACGGTAGCCGATTTTGAGAAATGGCTGAAGATGCGCAATACGGAGCCATCGGTATCAACAAGCATGGATCTGGACGCGGCCAAGGTGGTGGAGGGTGTTGATCGGTATCTGGGCGAGGAAGTGCTGTCGCATGGCTACTTTCTAAGTAAGGATCCATATGGTTTGTCCATCGACATTGATCTGGCAGATGCCAAGAAGCTCAATTTGTCATCGGGCTATGATCCGATACTGCAGGATTTGACACAGAGTGAGAACCGATTATTAGAACCTCCATGCGAGAAGGTTGTCGATGAGTTCATGCTACCAGAATTTCAATTGGATCATTTAGATCCTCTGGCAGCGCTCTCATCGGATGACATGATGGTAGCCGGTGAGATCCTACCATCCACCAGCAGCCAatcgatattaaatcaaatagagAACCAAGACGTTGAACAAATTGCTCCAAAAATGGAAGTTTTAGAGCGTAACACTGAAGTAGCCTGTGAGAAATCTACGCAGGTTGTTCTCAATGAAATACCAATGAATTTAGAAGCAATGAATAAGATGCAGGATATAAAGTCAGAGCAGGAAACTGCGATACAGTGTTCGAGAAGTTCTTCAGAACTTTTTATTGAGGCGTTATCATCGATGGAGGAGAACTCACCGAATTCCATAGAAACAGATACTCAAAGTAGCATAATAGAACAATTGAAATCGAAGACTAGAATGAAACTTGAACCGCGCATCATTAAAAAGCGTCGGCAGATGACGGAACGATTAGAGAAGAAGCTTGACAAGCACATCAATGGAAAGAGTTTCACCAATACGGATTCGCAGGATGGTGTAATGGCTGTGGTTGCCATATCTACTGATAAAATATCCAACACGACGCAGATTGTCATCAACACTGGCACGGAGAAGCAAATCTATCAGGGCAAAACTTCGGAGCTGATTGAAGCAACAGGCAACTTTCCGAAATTGCCCAAGATAGATACATCTACTGCGATCTGGAACGGTAACGTCGAGTATAATGTTGATAATACTCCGAGTAGCTCGTACGAAATTGTCATATCCAATGCGCTGGAGGAACTAGGCATCACCGATGACAGTTTGCAACCTGTAAGCGTTACCGAACACGACAAGGTATGGTTCTGCCCGCGAGCCGGTTGCAACAGGCAATTCGGTAGACTATACACTTTAAAAGGTCACTTGTTGGCTCATTATGGAGTTAGACCGTTTAAGTGTGACTTCGAAGGCTGCACTTGGGCCTTTTATTCCGAATTCAAGTTAAAAAGACATAAGGAGACACATCTGAAGCGCAAGGATCATGTGTGCCAAGTGGAAGGTTGTAACCGTCGTTTCACCACTGTCTACAATCTGTGGAGCCACGAGAAATTACATAGTCGTCCAAACCGGATTGTTTGCCAGGTACCGAACTGTGGCGAAAAATTTCAGACGAAGCGGGCACTGGAACTGCATATGAAATCGCATGATCAACGCCACGCGCCTTATGTTTGCCAACACGAAGGTTGCGGCAAGCGTTATTACAGCAGCAACGCGTTGACGTCTCATCAGCGATCGCACAGCTATAAAGAAGTGGACATCAAGTGCTCATGGCCGGGCTGCGGAAAAGTTTTCGATAAACCGTGCCGACTCAAAGCCCACACGCGCTCTCATACCGGCTGCAAACCTTACCATTGTACGTTTCAGGATTGCAAATGGGCATTTTCATCATCCAGTAAACTTAAGCGCCATCAGAAGAAGCATACCAACGAACGCAAATTCATGTGTGATGCACCGGACTGCGGTAAGGCTTTCATGCGTTCGGAACATTTAAAGGAGCATCGGCTGACACATAAGGAAGGCCGATTTTTCCAATGTTTTGTATGCGATGCCCGATTCTCTGCCAAGAGCAGTCTTTATGTGCACATTAAAAAGCATCAGCAGACCAAGACGGACGTAAGCCTAGCCGACAATGTGCCGACAGAATTCGGCTATACTTCCGGCGATCAGAAACGTTCGAAAACGGACGAATCTGAATGCTTGCGAGCGAAACCGATCGTCAAGCCGAAGCAAAAATCCACGGAACTAACGAATGCCATAGAAACTGTCACGAAGGAAGATGATGTCGAGAAGCCGAATACGATATGCGACATCAGTACGCGTTCCCAGAATTCTCAGGATCAACTGGAATGGTTGTATCGTTGTCCTATAGAGATGTGCGATTATCTGATTGGAAACGAGACGAGTCTACGCGAGCACTTACTGAAGATGCACGGTATACATTGCGACGATCTGCTGGATAAACCGTCTTCGGACGTTACTAATACAGACTACATTCTATATGCGGTGCACGAATCACCCCCAACTTCGCCAATCGCCATCGAGGAAGAACAGATGGTTATGGTGACACCATGCGACGCCGTTATCCTCGGCACCTCGTCATCAAGCGCGGATCGTCGATGTCTACCGGAACCGGAACCGCCACCTTTCAATAATTTACTTAAGAGTTCGGAATCGCTACATTCCGATGCCTGTGTCGAGCAGATTGACAAGGGAATTCTATCGATCAAGAAAGATCAGAATTCTGCGAGGACAGATCTGACATATTCGGATTGGTCCAGACTGAAGAAAAACGGCACACTGACGGATTCGATAGTGACAAACACATCGGACGTTGCACTGGGTACAAGTAGCGATCTGAGTGAGAATCTATTGCTCACGGAAGAATTACCATCGATGTATTATCAGGACGATGTGGCAGGTACGGAATATCAGGTGTTATTATTGGACTCGAGTCCGCTTGAGAGTGCCGTTAATTTGCGCGGTCTCGAATAA
- Protein Sequence
- MSCRGAAAIVACTSRRRSREKIGSEGTECVPSDTLFAPSKTEGIAKKDRRIRKNEAWHQTTVSKSADVVETVADFEKWLKMRNTEPSVSTSMDLDAAKVVEGVDRYLGEEVLSHGYFLSKDPYGLSIDIDLADAKKLNLSSGYDPILQDLTQSENRLLEPPCEKVVDEFMLPEFQLDHLDPLAALSSDDMMVAGEILPSTSSQSILNQIENQDVEQIAPKMEVLERNTEVACEKSTQVVLNEIPMNLEAMNKMQDIKSEQETAIQCSRSSSELFIEALSSMEENSPNSIETDTQSSIIEQLKSKTRMKLEPRIIKKRRQMTERLEKKLDKHINGKSFTNTDSQDGVMAVVAISTDKISNTTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSTAIWNGNVEYNVDNTPSSSYEIVISNALEELGITDDSLQPVSVTEHDKVWFCPRAGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDHVCQVEGCNRRFTTVYNLWSHEKLHSRPNRIVCQVPNCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYHCTFQDCKWAFSSSSKLKRHQKKHTNERKFMCDAPDCGKAFMRSEHLKEHRLTHKEGRFFQCFVCDARFSAKSSLYVHIKKHQQTKTDVSLADNVPTEFGYTSGDQKRSKTDESECLRAKPIVKPKQKSTELTNAIETVTKEDDVEKPNTICDISTRSQNSQDQLEWLYRCPIEMCDYLIGNETSLREHLLKMHGIHCDDLLDKPSSDVTNTDYILYAVHESPPTSPIAIEEEQMVMVTPCDAVILGTSSSSADRRCLPEPEPPPFNNLLKSSESLHSDACVEQIDKGILSIKKDQNSARTDLTYSDWSRLKKNGTLTDSIVTNTSDVALGTSSDLSENLLLTEELPSMYYQDDVAGTEYQVLLLDSSPLESAVNLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280152;
- 90% Identity
- iTF_01077701;
- 80% Identity
- -