Cnig025296.1
Basic Information
- Insect
- Cataglyphis niger
- Gene Symbol
- -
- Assembly
- GCA_004329405.1
- Location
- SJPC01008265.1:4651-7021[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-13 1.5e-09 39.3 0.2 3 38 100 134 98 139 0.91 2 2 3.4 2.9e+04 -3.2 0.0 30 38 162 170 162 173 0.84
Sequence Information
- Coding Sequence
- CTGGTTTGGGAGGACTATCGGGTATTCGGCACGACGAGCAGAGTTAACAATTACGTCGAGCGCAAGTTTAGATTCAAACATATGGATCACATCGCGGGTAGATACAAGTGCTCCAAGTGCGCAAAGTCATATCGATGGAAGCATCATCTCGTGGAGCACGTCAAGGCCTCATGCGGCCAGAAGAAAGCAGAGTGCTGCCCGTATTGCAGTTATAAGAGCAATCAATCATTTGCTTACGAGACCCGTTTACGAAACACGAGATATACGATGAAGTCGCGGAGATCTAAACGCAATTCGGAACAGGTGACGAGAGCCATCGAAGCTGTCGCCGGTGGGATGTCCTTGAGGAAGGCTGCAAAGATGTACTCTATATCCAAATCGGTTCTACATCGATACAGCAAGCACGATACGCGTACGGTGAGCTACTTGAATTGCCTGAGGGAAACTTATCCGTGTAAGAACTGCGGCAAGATCTACAACTATTACTCCAGCCTGGCCAGGCATCTGAAGCACGAGTGCGGCGTGGAGCCCAAGTTTCACTGTCCCTTGTGCCCTTACAAAACGAAGCACAAATCCAGCCTCAACACCCACCTAAACGGCAGGCACATGAAGCGATTGAACGAATTTTACACTTTGCCCAACGGCAACAAGATGTCTTCAACGGATGCCAGGAACTGA
- Protein Sequence
- LVWEDYRVFGTTSRVNNYVERKFRFKHMDHIAGRYKCSKCAKSYRWKHHLVEHVKASCGQKKAECCPYCSYKSNQSFAYETRLRNTRYTMKSRRSKRNSEQVTRAIEAVAGGMSLRKAAKMYSISKSVLHRYSKHDTRTVSYLNCLRETYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKRLNEFYTLPNGNKMSSTDARN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00264194;
- 90% Identity
- iTF_01245142;
- 80% Identity
- iTF_00280784;