Clem023630.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008365.1:4096604-4100497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.56 42 5.4 0.2 1 23 10 32 10 32 0.96 2 30 0.0024 0.18 12.8 0.1 2 23 60 82 59 82 0.95 3 30 6.8e-06 0.00052 20.8 2.4 1 23 130 152 130 153 0.96 4 30 0.00075 0.058 14.4 1.4 1 23 157 180 157 180 0.96 5 30 0.38 29 5.9 0.6 2 23 183 205 182 205 0.94 6 30 0.35 27 6.0 0.1 2 19 212 229 211 232 0.93 7 30 0.0033 0.25 12.4 1.4 1 23 287 310 287 310 0.94 8 30 3.6 2.7e+02 2.8 0.0 2 23 339 361 338 361 0.90 9 30 0.0021 0.16 13.0 0.5 1 23 383 406 383 406 0.97 10 30 0.00068 0.052 14.6 0.7 3 23 413 434 412 434 0.93 11 30 0.00011 0.0087 17.0 2.3 1 23 439 462 439 462 0.92 12 30 0.00036 0.028 15.4 0.4 2 23 468 490 467 490 0.94 13 30 3.1e-05 0.0024 18.8 4.4 1 23 494 517 494 517 0.97 14 30 0.17 13 7.0 1.5 2 23 524 545 523 545 0.96 15 30 0.0015 0.11 13.5 1.7 1 23 584 606 584 606 0.98 16 30 0.028 2.1 9.5 0.1 2 23 634 656 633 656 0.92 17 30 0.0035 0.27 12.3 0.4 2 23 677 699 676 699 0.95 18 30 0.00026 0.02 15.8 0.3 1 23 704 727 704 727 0.96 19 30 0.006 0.46 11.6 1.8 1 23 732 755 732 755 0.96 20 30 0.0014 0.11 13.6 0.2 2 23 758 780 758 780 0.96 21 30 0.35 27 6.0 4.3 2 22 787 807 786 807 0.94 22 30 0.0023 0.18 12.9 1.5 1 23 863 886 863 886 0.96 23 30 0.016 1.2 10.2 0.0 2 23 914 936 913 936 0.95 24 30 0.9 69 4.7 0.0 2 23 959 982 958 982 0.92 25 30 3.6e-05 0.0028 18.6 0.2 3 23 989 1010 988 1010 0.95 26 30 0.022 1.7 9.8 6.5 2 23 1015 1037 1014 1037 0.94 27 30 0.00065 0.049 14.6 2.1 1 23 1042 1065 1042 1065 0.94 28 30 1.4e-05 0.001 19.9 3.7 1 23 1069 1092 1069 1092 0.97 29 30 0.0044 0.34 12.0 1.3 2 23 1099 1120 1098 1120 0.96 30 30 1.3e-05 0.001 19.9 0.7 1 23 1126 1148 1126 1148 0.98
Sequence Information
- Coding Sequence
- ATGATACCGTTTAAGTGGCGAGGGAAATTTATGTGCTTTTACTGCGGCGACGACATCGACGACTATGTCGAGTTGCGCGCACACACCAAGTCACACGGCATATGCTCAATACGAGACAGAGCTATCAAGTTGGTTAAGTCCCGGGATTCCGAAGTTAAAGTGGACGTGTCGGATATTAGATGCGAACTGTGCGACGAATCGTTCAGTCGCTTCGACGACATAGTCGCACATTTGATTTCTAAACACCAAATGCCGTATGATAAAGAAGTGGATGTCACTATTATGACGTACAGGCTGTTGGATCTCAAGTGCGTCTTCTGCGAGGACAGCTGCCAGAGCTTTAGCCGCCTCGTGAAACACGTGAACCACGCACACCCCGTCAACTGTTTCGTGTGCAACGATTGCGAGAGGAAATTCAACAAGAAGAGGGACTTGGAGTCCCACATTCGGATTCATCACAGGAAAGAGTACAGTTGCAAAAAGTGCTCTTTGAACTTCCCTAACAATGCGGCTCTGCAAAAACATAAAACGCGCTCCCATATCTCGATGTGCAACATATGCTTTCAACCTTTTCCGTCGGACAGCAAGAAATTGGATCATATGAAACAGTCCCATTTCGACAGGGACGCCTTGGAATGTGGTTTTTGTCAGAAGACGCTAAGCACCAAACTGGCTCTGTTGAATCATGCTGGCAAATGCAACATGCAGAAATGTAAAAACGATGACTTGTTACTGTACGAAGAAACCGAGACCGCCGACAGTGCAGATAAGAAACCTACCGTCGCAGAAATAAGGAGCAATATCGCGTGCATCGTCAACATGTCCACCGCGCTGCCGTTCAAGTATTTCATGAACAAGTTCCGGTGTTTCTATTGTCCGAAGGATTTCATTGAGTGCGACGACCTCAAAGAGCACACCGTTATGGAGCACCCCTCCTGTAACAGCAAACTGAAGTGTCTCAGGCTACGGAACAGGGAACACGggatcaaaatcaaaatagacATATCGTATCTGACTTGCAAAATGTGCTTCGAGCCTATGGAGGACTTAGATGCCCTGATAAATCACCTCATAGCCGAGCACAAGGCTCAATACGATAAGAGCGTCGACAATAACATGCAGCCTTTCAAGCTGATTCGTGACCATTTCGCTTGCCCGTTCTGCGTTGAGGTGTACAGGTACTTCAGTACTCTGTTGAAACACATAAGCACCAGTCACACGGAGAACAGAAACATCTGTTCCTACTGCGGTATTTCGTTCCGCACTGATCCCAGTCTCAGAGCGCATATAACGCACCGGCATAAGCCCAACGGTCACAAATGCACGGTCTGCGACAAGGACTTCACTACGAGACACGCGCTGCGCGACCACTTAGGCAACGCTCACGGCAGTAAGGTGGTGAAGTGCCAAGTGTGCTCAGAGAGGTTCACTTCTCAATACGCGATGCAGCGTCATCTGATCAACGTACACGCCACCGGCCACAAATGCTCGTACTGTGGGAAAATGTTCACCAAAAACTCGTTCATGGTCAACCATATACGCCGGACGCACCTGAAGGAGAAAAACGTCCAATGTTCCGTTTGTTTTGAGAGATTCTTCGATGTGCACCTCCTGAGGATGCACACGGTGAAACATGTCGATGAGAACATCCGGGCGCCTTACGAGGGCCATGTCTCGGAACGGCGCCGGAAAAACTTGAAAATACTGTTCAACAACACATCTGTGCTCCCTTTCAAATGGCGCGGCAGATACAAGTGCTTCTACTGTCCCAAGGTCTGTGCTGAGTACGGAGATCTCAAGTCCCATACCGTTACACACGGCTCGTGCACCACCAAAGACTACTCCCTGAAAGTTATCAAGGGGAATCATATAGAGATCAAAGTTGATGTCTCTGATATGTCTTGCACCCTTTGCAGCGAATCCTTTCGCGATTTGACGGAGGTCATAGCTCATCTGATCGGCAAGCATAACTTGCAATACGACAATACCGTCGATATACCCTTCCAAACGTACAAGCTGGTGGATTTGAGCTGCTTGCTGTGCGACCAGAAATTCTCCTACTTTGGCTACTTGATCAACCACGTGAACACGTCCCATCCTCAAAACTGTTTCATCTGTGACGATTGCGGGGTCGCGTTCAATAAGAAAAGGGACCTGGCACTCCACTTTCGCAGCTATCATAGGCACGGCGGCTATCCGTGCGATCAGTGCGTTCGAcactttgataatttttttctgttgCGCAGGCATCAGGACAGTGCACACTTTAGGAAGTGCCGGGATTGCAATCTACGCTTTGTTTCTGTGGGATTGCTGCAAAAACACATATCAGTGGAGCACCCGGAGGATGGCAGTCTTAAGTGCGAGTTTTGCGCGAAGCAGTGCATTTCGTCGCACAGTTTGAAACAGCACAAGAGGAGGTGTCCTATAAAACTAGTCGTTTCAACAGATGAGCCCACAGACAAGCAGTTTCCGATAGAAAACAACCGTGAACCGAAAAAGAAACAGAACCTCAAACCGATCCGTCAAAATATCCAATGCGTACTGAACATGTCTACTGCGGTTCCCTTCAAGTTCTTCTCCAAGTTCTCCTGTTTTTATTGCTCGAAGAAGTTCGTGGAGTTCGAAGAGCTCAAAAGCCACACCCAGGTGGAGCACCCAGTGTGCGATTTGAAATCGAAATGCATGAGGAAGTGTAAAGGGGACAGAGTGTCAGTCAAGATTGACGTGACCTATCTGACTTGCAAGGTTTGCGGGCAGAAGACAGAGTCCCTAGACGGCCTTATAGATCACTTGATATCGGAACACAAGGTGGACTACGACAGGTCCGTAAGTGGGGGTTTGGAGCCTTTCAGGGTCATAAAGGACAAGATCCCTTGCCCGATATGCCCTGACCGCGTATTCCGATACTTCGGCATCCTCCTCCGCCATATGAACGCCGAGCACAGCAACAATAACAGGATCTGTGACTTCTGCGGACGCAGCTTCCGCAACGTAGCCAATCTGAACGTCCACATCAATTACTCGCACACGGGTTCTTGCGAGTGCGACGACTGCGGCGCTAAGTACAAGAACCAGAAGTGCCTGGCGAGGCACCGCGCCAAGTGCCACAACGCCAAGGACTACAAGTGCCCCAAGTGCCCGGAGAAGTTCCAGTCGCAGTACCACAAGCAGAAGCACCTGATTGCGGTGCATAACATCGGGCACAAGTGCGACGAGTGCGGCAAGATGTTCACGAGGAACTCTTTCATGAAGGACCACGTGAGGCGGACGCATTTGAAAGAGAAGAACGTATCTTGCTCGGTTTGCACGGCGAAGTTCTTCGACAACCACCTCCTGAGGATGCATATGGTAACACATGAAGGTGAAAGGAGATTCAGCTGTACGGTTTGCGGGAAGGCGTTCCTGAGGCGGAGCAACCTTTATTCTCACATGGAAATGCACAAGAAGTACGGCCATAGCGTCGGGCTACTGCCGGATATGATACGTTGA
- Protein Sequence
- MIPFKWRGKFMCFYCGDDIDDYVELRAHTKSHGICSIRDRAIKLVKSRDSEVKVDVSDIRCELCDESFSRFDDIVAHLISKHQMPYDKEVDVTIMTYRLLDLKCVFCEDSCQSFSRLVKHVNHAHPVNCFVCNDCERKFNKKRDLESHIRIHHRKEYSCKKCSLNFPNNAALQKHKTRSHISMCNICFQPFPSDSKKLDHMKQSHFDRDALECGFCQKTLSTKLALLNHAGKCNMQKCKNDDLLLYEETETADSADKKPTVAEIRSNIACIVNMSTALPFKYFMNKFRCFYCPKDFIECDDLKEHTVMEHPSCNSKLKCLRLRNREHGIKIKIDISYLTCKMCFEPMEDLDALINHLIAEHKAQYDKSVDNNMQPFKLIRDHFACPFCVEVYRYFSTLLKHISTSHTENRNICSYCGISFRTDPSLRAHITHRHKPNGHKCTVCDKDFTTRHALRDHLGNAHGSKVVKCQVCSERFTSQYAMQRHLINVHATGHKCSYCGKMFTKNSFMVNHIRRTHLKEKNVQCSVCFERFFDVHLLRMHTVKHVDENIRAPYEGHVSERRRKNLKILFNNTSVLPFKWRGRYKCFYCPKVCAEYGDLKSHTVTHGSCTTKDYSLKVIKGNHIEIKVDVSDMSCTLCSESFRDLTEVIAHLIGKHNLQYDNTVDIPFQTYKLVDLSCLLCDQKFSYFGYLINHVNTSHPQNCFICDDCGVAFNKKRDLALHFRSYHRHGGYPCDQCVRHFDNFFLLRRHQDSAHFRKCRDCNLRFVSVGLLQKHISVEHPEDGSLKCEFCAKQCISSHSLKQHKRRCPIKLVVSTDEPTDKQFPIENNREPKKKQNLKPIRQNIQCVLNMSTAVPFKFFSKFSCFYCSKKFVEFEELKSHTQVEHPVCDLKSKCMRKCKGDRVSVKIDVTYLTCKVCGQKTESLDGLIDHLISEHKVDYDRSVSGGLEPFRVIKDKIPCPICPDRVFRYFGILLRHMNAEHSNNNRICDFCGRSFRNVANLNVHINYSHTGSCECDDCGAKYKNQKCLARHRAKCHNAKDYKCPKCPEKFQSQYHKQKHLIAVHNIGHKCDECGKMFTRNSFMKDHVRRTHLKEKNVSCSVCTAKFFDNHLLRMHMVTHEGERRFSCTVCGKAFLRRSNLYSHMEMHKKYGHSVGLLPDMIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006449;
- 90% Identity
- -
- 80% Identity
- -