Clem008218.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963931975.1
- Location
- OZ008344.1:16607107-16616361[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-52 4.9e-48 164.5 14.0 1 138 128 268 128 301 0.86 2 2 0.33 8.7e+03 -3.8 3.5 54 71 315 332 276 361 0.55
Sequence Information
- Coding Sequence
- ATGGGCAATGGTTCTGAGATGGCTACTCCCAATAACACTGACGAGGAGAACGAAGGAGCGTTCACGGATGGGGATTTCGAAGACTCCGATGAGGAAACAGTCGTAGAGCGACTTGACAGTGCACACAGATCGCGCGTTCCTGTCAACGAAACTTTGAACACAGAAGTTCATAGGGAAAACGGATATCATGATAAACATTCAATTAAGACTAACGGAATAGGTGCACATGCGAAACTAAATGGACACAAGGCTAGCGAAAACGGCAATAGCAGCTATTCAGACTCTTGCAAGGATGGCGAACCTGGAACGGACCTCCGGAGAGATACGCACGGGGATCAAAATACGTCTATAGTTGGAATCATTGGCGACCAACACAACCATGCAGAACAGCGTCTGGCGGCGCGGCGGGCTGCCCGCGCCGAGGCGCGAGAGATTCGCATGCGGGAGCTGGAGCGGCAGCAGAGGGAGCAAGAGGACCATGCCGACAAGGCGTACGACATGTACGTGGGCTCCACAGCCTCCACCATCGGCAGCAAAGAAAGCGTCGGCCGACGGGGAGGCTCGCGGCTGGCGGGGCTGGCCCCGGCCTCGCTGCATTCGCCGCGGCGTAGCTCGGAGGACTCCGCGGACGACGGCTTCAGCGTTAAAGATCTCAGGCACGAATTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCCCAGCTGGACAACGACAAGGCCGCGCTGGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTCCAGGAGGAGTATTCTCAGTTACAGGTACTGGTCATAAAATACGCccTGGAGACGCTGAGGCGGTGCGTGTCGGAGGCGAAGGCGCGGGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGTGGCGCGGCTCGAGGCGCAGGTGCGCGGCTGCGGGCGAGGCAGGACCACCAGGACGAGCACGAGGACCAGCTCAAGCAGGAGCGGCGCAGGCTGCAGCGGGAGGTGCTGGCTGCGGGCGAGGCAGGACCACCAGGACGAGCACGAGGACCAGCTCAAGCAGGAGCGGCGCAGGCTGCAGCGGGAGGTAGGCACCACTGCACTGTAG
- Protein Sequence
- MGNGSEMATPNNTDEENEGAFTDGDFEDSDEETVVERLDSAHRSRVPVNETLNTEVHRENGYHDKHSIKTNGIGAHAKLNGHKASENGNSSYSDSCKDGEPGTDLRRDTHGDQNTSIVGIIGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYVGSTASTIGSKESVGRRGGSRLAGLAPASLHSPRRSSEDSADDGFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYSQLQVLVIKYALETLRRCVSEAKARAARAEAEAALQAAGVARLEAQVRGCGRGRTTRTSTRTSSSRSGAGCSGRCWLRARQDHQDEHEDQLKQERRRLQREVGTTAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -