Clem019518.2
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008359.1:175627-178141[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-08 5.5e-05 23.3 0.0 1 42 19 60 19 62 0.95 2 2 8.2 1.1e+04 -3.2 0.0 6 15 204 213 204 214 0.88
Sequence Information
- Coding Sequence
- ATGCCTCGTAAATATAAGCGAAAACCAGGCGTGGTGCCGCGCACCATCAACTGGACAGAAGATAGCTTAATACTTGCCTTGGAAGAattgagagagaaaaaaaaaggtattaatGAAATTTCTCGAACCTACGGAATATCCTCTCGAACCTTAAGAAGACGTTACGAAACAAGTAACCAGCAACTACTTACTCAAgGAAAATATCCTGTTCTTGGTTTCAAAAATGAAAAAAGACTGGTAGCTCATATATTGAAACTCGGAGACGCCGGTTTTCCGCCTGATAGAATTGTAATTCGCCAATTAGCTTATCAGTTTGCCGAGAAATTGGAGTTAAAACACAGCTTTAACAATGAGAATGAAATGGCTGGACCACAATGGCTGAAAAGCTTTCTTGAAAGAAATCCTGAAATAGCTTTGAGACAAGCTGAGGGTTTATCAATTGAAAGAGCGAAGGGTCTCAACAGAACAGAAGTTGCAAATTTTTTCACACTCTTAATAGATACTTTAACTAAGAATAATTTACTGGATAAGCCAGATAGAATATTTAATATGGATGAAACCGGTGTCcagctaaataataaaattggtaAAGTATTAGCGAAGAAAGGCGCTAAAGCAGTTAAATCAGTCACTTCCGGTGAAAAAGGAGAAACAATTACTGTTGTTGCCTGTTGCAATGCTATTGGAAATTTTCTCCCACCAGTTCTGATTATCAAAGGCGTAAAGAAGAAACCCGAATTCGAAGAGGGACTTCCGCTTGGTTCTCAAGTTTACATGCAAAAGAAATCGGCATACATTACCTCTGATCTTTTTTATAAATGGCTAACTGAACATTTTATCCCACGAAAACCATCAGGGAAGGTGTTACTGATTTTGGATGGTCATTCATCGCACTCAAGTGCTGTCAACATGCTAGAAACTGCTCGTGATAATGATGtgatattgctttgtttacctAGTCACACTACTTCAGCTTTGCAACCGTTAGATGTAGCAGTATTCGcaccatttaaaaaatattataatgctgaGACAAACAATTTCATGCGTACCAATCCACAAAAAAAACTGAATCGGTACAACTCGGGCCAGCTAATATCCAAGGCATGGATTCGAGCAGCTGTTCCCGCCAATGCAATAAGTGGTTTTCGTGGCAGTGGAATCTACCCAGTGGAACCAAATGCCCTATCAGGTGCTGAATTTGCTATATCAGATCTAGCGTTGGGGGAACTTGCGCTGGAACAAGAATCTAATTCTCTAGAAGATCAAGTACCAGGAGTTTCTGGAGTGTCTGCGTTAAAGAAGTGCTCACAACATTCTGAGCAAAGTTTCGCGTTAAATGAAAGAGACCAAGTGTCATCCTTAAGCAAACAAGTACCAAGTATTTGTACCGTACCGGAATCTGAGTCTAATCAAGGTCTACATCATCGAAACGAACTGTTTCCATCAGGATATCAAGTTCCAAGTAATACTGATAATCTGGAAATTATTGTACATGAGTCTGAACAGAATAACGAGAACCAAAATCACACGCCACCGAGACCGCCTTCGAGCCTATTAAATTTGTCTCAAGATTGTTTAGCCTTAGAAGATTGCGACATTGAACATTACATCTTTGATAATACTGAGTTGTCATTACCATCGCTGATATCTTTAAATGAATCCCAAAACCAAAATCTAGAAAAAGAAACACCGtctaaatttttacatcaagCATCTCCTATACCAAGAATACCGCTAAGCATAAGTAAAAGATCTAAACAATCTGCAGAAATTTTAAACTCCCACGATAAAATTGACCAGAAGAAAGATAAAgcggagaaaataaaaaaaacaaataaaattacgaaaacTAAAATTACCACTgagacaaagaaaaacaaaccaGCTGGGGAGAAGAAAAGCATTAAGAAGAAAACAGGGCTAcagcaaaagaaaaaaaagactaaaaaatatattgatatgaCTAGCAGTGAAATTGAATCTGATGACACAGATTCAGATATTGTGAAACAGAAAGGAGTAAAAATATTAAGGAAGAGAAAATTACAGATTTACAGTTCTGACAGTTCCGACAGTAGTGGAAGTGAAGAAAATACATTCAGCCCAAAAACGCTTAAAGGGAAAGCCACCAAAGGACTCCCAATCAAAAGAAGCAAGGACGAAAAATCGATAAAAGACACTGAAAagatattaaaagtaaaaaattttaattcaatagtAAATACGATTAAAAAAGTTTCAGTTGATAATTATTGCGTAGaatgttatgaaaattacaattttactaAATCAAAATCAGATTGGATTCAATGTGAGACGTGTCATATGTGGTTGCATGAAACATGTACAACATTCAAGAATTTTTGTAAAAGATGTGGAAAATTACAAATGTTAGCTGCGGgcaaaaattaa
- Protein Sequence
- MPRKYKRKPGVVPRTINWTEDSLILALEELREKKKGINEISRTYGISSRTLRRRYETSNQQLLTQGKYPVLGFKNEKRLVAHILKLGDAGFPPDRIVIRQLAYQFAEKLELKHSFNNENEMAGPQWLKSFLERNPEIALRQAEGLSIERAKGLNRTEVANFFTLLIDTLTKNNLLDKPDRIFNMDETGVQLNNKIGKVLAKKGAKAVKSVTSGEKGETITVVACCNAIGNFLPPVLIIKGVKKKPEFEEGLPLGSQVYMQKKSAYITSDLFYKWLTEHFIPRKPSGKVLLILDGHSSHSSAVNMLETARDNDVILLCLPSHTTSALQPLDVAVFAPFKKYYNAETNNFMRTNPQKKLNRYNSGQLISKAWIRAAVPANAISGFRGSGIYPVEPNALSGAEFAISDLALGELALEQESNSLEDQVPGVSGVSALKKCSQHSEQSFALNERDQVSSLSKQVPSICTVPESESNQGLHHRNELFPSGYQVPSNTDNLEIIVHESEQNNENQNHTPPRPPSSLLNLSQDCLALEDCDIEHYIFDNTELSLPSLISLNESQNQNLEKETPSKFLHQASPIPRIPLSISKRSKQSAEILNSHDKIDQKKDKAEKIKKTNKITKTKITTETKKNKPAGEKKSIKKKTGLQQKKKKTKKYIDMTSSEIESDDTDSDIVKQKGVKILRKRKLQIYSSDSSDSSGSEENTFSPKTLKGKATKGLPIKRSKDEKSIKDTEKILKVKNFNSIVNTIKKVSVDNYCVECYENYNFTKSKSDWIQCETCHMWLHETCTTFKNFCKRCGKLQMLAAGKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01341197;
- 90% Identity
- iTF_00279061; iTF_00279064;
- 80% Identity
- -