Cbif002244.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- Hr39_3
- Assembly
- GCA_963920755.1
- Location
- OY987193.1:22408446-22414098[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.44 3e+03 -2.6 4.9 130 189 168 228 70 265 0.50 2 4 4.6e-08 0.00031 20.4 0.0 1 22 361 382 361 388 0.89 3 4 0.043 2.8e+02 0.8 0.0 89 121 422 451 385 475 0.68 4 4 2.1e-72 1.4e-68 232.3 0.2 205 408 490 688 473 688 0.97
Sequence Information
- Coding Sequence
- ATGGCGGCCGACATGCGCTCCCCCAACGTATCCATCACGCCAATAAACGTCGAGGCGTTCCACCCACCGGATCCCCCTCCTGACCCATCAGATGCGGAAGTCGCGTGCATTGACTTCGACCACAAATCTACCGTACTCATGCGCACCAAGGATGCTGCGCAAGGAGAGAAACTTCTCCCACCTAGGCCTATGTCTTGGGAGGGGGAACTTTCAGATCACGAAAGGGATCACATGTGTGTGGATGAAGATAGTTCGCATCAGGTACCAGAAAATCTATCGCTTCCCTCCAAGAATAATCAGCCACCATTACCTCTCGATTCAAAAGAGAGTCCTATCCTGCGCCTCAAACAGCCTCCCATGGGGACGTACTCTCTCCACAGCACGCCAAGCAACTCACCGCTCCTAAGCCAGCGCCATCCAGTGACAGGAGTTCCAATCATAGCTCACAAGGCTCTGAACGTACCCCCCACTCCTAGCCCAGACTCAGCAATACACTCCGCCTACAGTGTGTTCAGCTCACCAAATCAGAGTCCGCTTACGCAGAGGCACATTACGCTGACCCCGAATTTGAGCAGGAATAATAGTGACGCGTCTCATTCGAGTTGTTGTAGTTATTCGAGTGTTTCCGTTTCCGTGTCGCCTACGCAACAGTTTTCGCCTACTCACAGCCCTATTCAGggTCGCCATATGCACAGTATTCACAACAGCCCCCTACATCACAACGTCCTGTACCGCAGCCTTCAAGACGATTCCTTAGTGCAATACACAAACGAGAACGATGGTCTCGAGGAGAATGACGAGAAAATCGGACTGTTACACACCTCGCTGCCAGCTCAACCGGGAATATCAAGGCAACAGCTCATCAATTCCCCATGTCCGATTTGCGGCGACAAGATCTCGGGCTTCCATTACGGGATTTTCAGTTGTGAATCGTGTAAAGGATTCTTTAAGAGGACTGTGCAAAACCGGAAAAATTATGTGTGTCTGCGGGGTGCGCAGTGTCCGGTGACAGTGTCCACGAGAAAAAAGTGTCCCGCGTGTAGGTTTGATAAGTGCTTACAGTGTGGGATGAAACTTGAAGCCATAAGGGAAGATCGTACTAGAGGTGGACGATCAACGTACCAGTGTTCCTATTCGCTGCCACCCTCGTTAACCAATCACGATTTTCTAAGATCGAGTACGACAGATCTTAGACATGGTTTCGGTGAACACGGCAGTCTGTCTGTTAAATTGGAACCACCTGATATTGGTAGTTCACACTATAGAAGAATGGCCCCTGGATCTAAAGGTGTCCCACCATTATTGCAAGAAATAATGGATGTGGAGCACCTATGGCACTACAACGAATCAGAGCTCAAGAAACTAAACACGGAAGGCCATTTAGGCAAAGAAGGTTCAAGTGGAGCGGTTCACAATTTGGCCACCCATCCTCTGCTGGCAGGTACAGCTTTGGCTGGATCTACCGACACGAATCCTGATTTTGTTgcaaatttatgcaacatcGCTGATCATCGGCTGTACAAGATTGTAAAATGGTGCAAGAGTTTGCCTTTGTTCAAAAATATATccaTTGATGATCAAATCTGTCTTCTGATAAACTCGTGGTGCGAACTACTGCTCTTTTCTTGTTGTTTTCGATCCATGTCAACTCCAGGTGAAATAAGAGTTAGTCTAGGAAAAAGTATAAACCTGAGTCAAGCTAGAGATATGGGAATGCAAGCATGTATCGAGCGTATGCTTAATTTTACCGAACAATTGAGGAGGTTGCGAGTGGACCAATACGAATATATTGCTATGAAAGTTATACTCCTTTTAACATCAGatacATCCGAACTTAAAGAGGCTGAAAAGGTTCGAATTTCCCAAGAAAAAGCGTTAAAAGCTTTACAAGACTACACAATAATGCACTATCCAGATAGTccttcaaaatttggtgaatTACTTTTACGAATTCCTGAACTACAGAGAACTTGCCAGGTTGGAAAAGAAATGTTGACAATAAAGTCAAAAGATGGCGATGGACCAAGCTTTAACCTACTCATGGAGCTACTCCGTGGTGACCACTGA
- Protein Sequence
- MAADMRSPNVSITPINVEAFHPPDPPPDPSDAEVACIDFDHKSTVLMRTKDAAQGEKLLPPRPMSWEGELSDHERDHMCVDEDSSHQVPENLSLPSKNNQPPLPLDSKESPILRLKQPPMGTYSLHSTPSNSPLLSQRHPVTGVPIIAHKALNVPPTPSPDSAIHSAYSVFSSPNQSPLTQRHITLTPNLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPIQGRHMHSIHNSPLHHNVLYRSLQDDSLVQYTNENDGLEENDEKIGLLHTSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVSTRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLTNHDFLRSSTTDLRHGFGEHGSLSVKLEPPDIGSSHYRRMAPGSKGVPPLLQEIMDVEHLWHYNESELKKLNTEGHLGKEGSSGAVHNLATHPLLAGTALAGSTDTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSINLSQARDMGMQACIERMLNFTEQLRRLRVDQYEYIAMKVILLLTSDTSELKEAEKVRISQEKALKALQDYTIMHYPDSPSKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753059;
- 90% Identity
- iTF_00278177;
- 80% Identity
- iTF_00278177;