Cbif009164.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_963920755.1
- Location
- OY987196.1:15904475-15916129[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-97 4.4e-93 312.0 28.2 1 300 48 333 48 333 0.91 2 2 0.0061 1.2e+02 1.9 2.2 194 238 366 407 334 408 0.63
Sequence Information
- Coding Sequence
- ATGTGTTGTAAATATCTTTGTTGTGTTGTCCAGGTTGGGGGTTGGTGTGACGTGTTTGCCATGGATGGCGTAGGAGGCCGCAGACGTACTACAACCAGGTCATCCGCTGAAGATCAAGCTCTTGATCAGATTGCAAAGGAGgCCGAAGAAAGATTACGTGCAAAACGACTGGCAAGAGCCGAAGCTAGGGAGATTCGTATGCGCGAGTtggaaaaacaacaaaaggaACAAGAAGAGAATGCAGATAGACAATTCGACATGTTGGCCGAACCTGTTACCAGAACCCCTATTAGGGCCACTGTCAACAGATATTTGTCGAGCAGAAGAAGCTCTGAAGATTCCTTGGAAGATGGAGGAAGTCTGAGAGAACTTAGGCATGAGCTTAAAGAAGTTGAAGATAAATTTAGAAAGGCCATGATAACCAATGCCCAACTcgacaatgaaaaagcatcTTTAACTTACCAATTAGAACTACTAAAAGACAGGTTTCAAGAATTAGAAGAAGAACATGGTCAATTAAAACGAGAACATCGAGATAAGTGTAGGGATCACGACCAATTAAAAAGACTTTCTGTAAAACTGAAGGATGACTTAGCAATTACGAAAGCTGAGCTGGATGAGCAAAGTAGTTTAATAACCGAATACGGTTTAGTTGTGGTTTGTGATGAAGTGTCGGACATGAACGGTGATATTAGTGAAAATTGTGTCGTGGAACCCCCTAAAAAGTCATTAGTGAAAGCTGAAAATGCGAAGCTGTTAGGTACCGTTGAAGGAAGTTTAGatgtcCGGCTTACAAAGtttttaagagaaaaaaaCGAACTACAAGATGAAATAAGCCATTTACAATTAGAGTTAGAAGAAGAACGAAGTAGAAGAAAACGAGCAAATTCATCACATAATGGACCATTGTCGGACTACGATGTAGATGGCGATTCACAAAGAGATGCCCTAGCGGATTATAAGTTCAGAGCACAAAAAGCAGAGCAAGATGTTGCCACATTGCAGGCCACTGTAGAACGATTGGACAATCAAGTAACGAGGTATAAAACTGCCGCCGAAACTGCAGAAGCAGCAGAGGAAGctttaaaattggaaaaacggaAACTTCAGCGAGAGgcaagaGATGCTATAAGTAGAGTGGAGGAATTGGAAACAGCAAACTCGCATTTAGGAAAACGATTAGACAAGCTTAAAAATGCCAAATCAACTCTACTTAAAGAACTATGA
- Protein Sequence
- MCCKYLCCVVQVGGWCDVFAMDGVGGRRRTTTRSSAEDQALDQIAKEAEERLRAKRLARAEAREIRMRELEKQQKEQEENADRQFDMLAEPVTRTPIRATVNRYLSSRRSSEDSLEDGGSLRELRHELKEVEDKFRKAMITNAQLDNEKASLTYQLELLKDRFQELEEEHGQLKREHRDKCRDHDQLKRLSVKLKDDLAITKAELDEQSSLITEYGLVVVCDEVSDMNGDISENCVVEPPKKSLVKAENAKLLGTVEGSLDVRLTKFLREKNELQDEISHLQLELEEERSRRKRANSSHNGPLSDYDVDGDSQRDALADYKFRAQKAEQDVATLQATVERLDNQVTRYKTAAETAEAAEEALKLEKRKLQREARDAISRVEELETANSHLGKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -