Cpal005956.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000070.1:265442-272853[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0038 25 5.2 0.1 20 46 229 255 222 260 0.84 2 7 0.067 4.4e+02 1.2 0.4 25 47 267 289 258 296 0.79 3 7 0.011 71 3.8 0.0 21 46 320 345 309 351 0.85 4 7 0.017 1.1e+02 3.2 0.1 21 43 348 370 344 375 0.83 5 7 0.00031 2 8.7 0.0 17 45 371 400 362 403 0.82 6 7 8.3e-05 0.54 10.5 0.2 21 44 404 427 400 431 0.90 7 7 0.013 84 3.5 0.0 21 46 432 457 427 459 0.87
Sequence Information
- Coding Sequence
- ATGCAAAAATCAAACCAAGACTTGGAGGGGAACAGTCATGATATACCGAGCTTCCACGCTGTTAACATTAAGGTTGAAACATCTTTCGTAAACAAGGACGATGGAGAAGAAATAGTACTTTGGAAGAAAGATATGAGGCAAGAAAAGCtgcatacagacacagaacataaACTGGACATCGGGGAGGTGGTGATCAAGATCGAGAATTGTGATTACGATGAACGTGAGGCTGGCGACGggccgcgcggcgcgggggACAGCCTCGCGGGCGGAGACGTCAAGCTGGAGGTGCCGTCGGACCAGAGCAACGACGAGGGCTCCTCGAACGCCGTGTACCTTCGGAGTCTGTACCCTCAAGTGGCCGTTGACGTGAAAGTGGAGATGAGCCCCCGAGGGAGCGAGGGCtcctatgatgatgatgacgacgaCGAGGAGGACGACGACCAAGACGAGTGGGCAGGAGGTTATTCGGTTAAGAGCCGCGGCACAGACGAGTGGTCTTCGAGTGTGGTCAGGAAGATCAAGAAGGTGAACATCTGCAGCCTCTGCCCCTACCAAACCAAGAACGAGGCAACGCTGACCACGCATCTCAAGGCGCACAACGCGAGGAGATCCTACAGTTGTCACCTTTGTCACTACAGGAGTATATACGAACACCATCTCAAGTATCACATGAGAAAGCATTCTGGCGAGAAACCTCATTCGTGTGAAATCTGCAAAAAAACTTTCAGCCTAAAAGGCACTTTGAATAGACACTTGAGGAATATTCACAGGAAAGTGATCACTAGTGGGAAGGTCCACTCGTGCCACATATGCTCCAAGGAGTTCCGGCAGAAGTGTATGTTAGTGAAACACTTTGCTAGAGTACACTCTATAGGCAAACCTTACTCCTGCTCTATCTGCGAGAAGACGTTCAGCGATAAGGATAAACAGGAGTCTCACATGAAAACACACGCCGGCGAAAGACCGTTCATGTGTGAAATATGCAAAAAGGGATTCACGCAAAAGAGCATACTAAAAACGCATTTGAGAACGCACTCTGGCGAGAAACCGTTCTCGTGTACAATATGCGACAAGGCGTTTACACAGAAGGACAAGTTGAACAATCATTCGCGGATACATTCCGGAGAAAAGCCGTTCACTTGTGACATTTGTAAGAAGGCTTTCACGCAGCAGAGCAGTCTCCATACACACATGAAGACGCACACCGGCGAGAAACCACATTCCTGTCCGATCTGTATGAAAGCGTTCAGCCAGAATTGCAAATTGAAGAACCATATGAGAACGCATTCTGGCGAGAGACCGTTCCAATGTGACGTTTGCAAGAAATCATTTAGTGAAAAAGGGAATTTGCAAAAACATACTAAATTACATGCCGATGAGTGTAGGaaatag
- Protein Sequence
- MQKSNQDLEGNSHDIPSFHAVNIKVETSFVNKDDGEEIVLWKKDMRQEKLHTDTEHKLDIGEVVIKIENCDYDEREAGDGPRGAGDSLAGGDVKLEVPSDQSNDEGSSNAVYLRSLYPQVAVDVKVEMSPRGSEGSYDDDDDDEEDDDQDEWAGGYSVKSRGTDEWSSSVVRKIKKVNICSLCPYQTKNEATLTTHLKAHNARRSYSCHLCHYRSIYEHHLKYHMRKHSGEKPHSCEICKKTFSLKGTLNRHLRNIHRKVITSGKVHSCHICSKEFRQKCMLVKHFARVHSIGKPYSCSICEKTFSDKDKQESHMKTHAGERPFMCEICKKGFTQKSILKTHLRTHSGEKPFSCTICDKAFTQKDKLNNHSRIHSGEKPFTCDICKKAFTQQSSLHTHMKTHTGEKPHSCPICMKAFSQNCKLKNHMRTHSGERPFQCDVCKKSFSEKGNLQKHTKLHADECRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277556;
- 90% Identity
- iTF_00277556;
- 80% Identity
- iTF_00277556;