Basic Information

Insect: Carterocephalus palaemon
Gene Symbol: Znf296
Assembly: GCA_944567795.1
Location: CALYMS010000187.1:160544-181325[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.0039 25 5.2 0.0 24 48 148 172 130 177 0.86

2 31 0.76 5e+03 -2.1 0.1 26 44 446 464 439 468 0.85

3 31 0.0029 19 5.6 0.1 20 48 540 568 523 573 0.83

4 31 0.028 1.8e+02 2.4 0.1 23 46 571 594 568 602 0.81

5 31 0.028 1.8e+02 2.5 0.0 23 46 620 643 617 651 0.81

6 31 0.028 1.8e+02 2.5 0.0 23 46 669 692 666 700 0.81

7 31 0.028 1.8e+02 2.5 0.0 23 46 718 741 715 749 0.81

8 31 0.028 1.8e+02 2.5 0.0 23 46 767 790 764 798 0.81

9 31 0.028 1.8e+02 2.5 0.0 23 46 816 839 813 847 0.81

10 31 0.028 1.8e+02 2.5 0.0 23 46 865 888 862 896 0.81

11 31 0.028 1.8e+02 2.5 0.0 23 46 914 937 911 945 0.81

12 31 0.028 1.8e+02 2.5 0.0 23 46 963 986 960 994 0.81

13 31 0.028 1.8e+02 2.5 0.0 23 46 1012 1035 1009 1043 0.81

14 31 0.028 1.8e+02 2.5 0.0 23 46 1061 1084 1058 1092 0.81

15 31 0.028 1.8e+02 2.5 0.0 23 46 1110 1133 1107 1141 0.81

16 31 0.028 1.8e+02 2.5 0.0 23 46 1159 1182 1156 1190 0.81

17 31 0.028 1.8e+02 2.5 0.0 23 46 1208 1231 1205 1239 0.81

18 31 0.028 1.8e+02 2.5 0.0 23 46 1257 1280 1254 1288 0.81

19 31 0.028 1.8e+02 2.5 0.0 23 46 1306 1329 1303 1337 0.81

20 31 0.028 1.8e+02 2.5 0.0 23 46 1355 1378 1352 1386 0.81

21 31 0.028 1.8e+02 2.5 0.0 23 46 1404 1427 1401 1435 0.81

22 31 0.028 1.8e+02 2.5 0.0 23 46 1453 1476 1450 1484 0.81

23 31 0.028 1.8e+02 2.5 0.0 23 46 1502 1525 1499 1533 0.81

24 31 0.028 1.8e+02 2.5 0.0 23 46 1551 1574 1548 1582 0.81

25 31 0.028 1.8e+02 2.5 0.0 23 46 1600 1623 1597 1631 0.81

26 31 0.028 1.8e+02 2.5 0.0 23 46 1649 1672 1646 1680 0.81

27 31 0.028 1.8e+02 2.5 0.0 23 46 1698 1721 1695 1729 0.81

28 31 0.028 1.8e+02 2.5 0.0 23 46 1747 1770 1744 1778 0.81

29 31 0.028 1.8e+02 2.5 0.0 23 46 1796 1819 1793 1827 0.81

30 31 0.028 1.8e+02 2.5 0.0 23 46 1845 1868 1842 1876 0.81

31 31 0.028 1.8e+02 2.5 0.0 23 46 1894 1917 1891 1925 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.0039	25	5.2	0.0	24	48	148	172	130	177	0.86
2	31	0.76	5e+03	-2.1	0.1	26	44	446	464	439	468	0.85
3	31	0.0029	19	5.6	0.1	20	48	540	568	523	573	0.83
4	31	0.028	1.8e+02	2.4	0.1	23	46	571	594	568	602	0.81
5	31	0.028	1.8e+02	2.5	0.0	23	46	620	643	617	651	0.81
6	31	0.028	1.8e+02	2.5	0.0	23	46	669	692	666	700	0.81
7	31	0.028	1.8e+02	2.5	0.0	23	46	718	741	715	749	0.81
8	31	0.028	1.8e+02	2.5	0.0	23	46	767	790	764	798	0.81
9	31	0.028	1.8e+02	2.5	0.0	23	46	816	839	813	847	0.81
10	31	0.028	1.8e+02	2.5	0.0	23	46	865	888	862	896	0.81
11	31	0.028	1.8e+02	2.5	0.0	23	46	914	937	911	945	0.81
12	31	0.028	1.8e+02	2.5	0.0	23	46	963	986	960	994	0.81
13	31	0.028	1.8e+02	2.5	0.0	23	46	1012	1035	1009	1043	0.81
14	31	0.028	1.8e+02	2.5	0.0	23	46	1061	1084	1058	1092	0.81
15	31	0.028	1.8e+02	2.5	0.0	23	46	1110	1133	1107	1141	0.81
16	31	0.028	1.8e+02	2.5	0.0	23	46	1159	1182	1156	1190	0.81
17	31	0.028	1.8e+02	2.5	0.0	23	46	1208	1231	1205	1239	0.81
18	31	0.028	1.8e+02	2.5	0.0	23	46	1257	1280	1254	1288	0.81
19	31	0.028	1.8e+02	2.5	0.0	23	46	1306	1329	1303	1337	0.81
20	31	0.028	1.8e+02	2.5	0.0	23	46	1355	1378	1352	1386	0.81
21	31	0.028	1.8e+02	2.5	0.0	23	46	1404	1427	1401	1435	0.81
22	31	0.028	1.8e+02	2.5	0.0	23	46	1453	1476	1450	1484	0.81
23	31	0.028	1.8e+02	2.5	0.0	23	46	1502	1525	1499	1533	0.81
24	31	0.028	1.8e+02	2.5	0.0	23	46	1551	1574	1548	1582	0.81
25	31	0.028	1.8e+02	2.5	0.0	23	46	1600	1623	1597	1631	0.81
26	31	0.028	1.8e+02	2.5	0.0	23	46	1649	1672	1646	1680	0.81
27	31	0.028	1.8e+02	2.5	0.0	23	46	1698	1721	1695	1729	0.81
28	31	0.028	1.8e+02	2.5	0.0	23	46	1747	1770	1744	1778	0.81
29	31	0.028	1.8e+02	2.5	0.0	23	46	1796	1819	1793	1827	0.81
30	31	0.028	1.8e+02	2.5	0.0	23	46	1845	1868	1842	1876	0.81
31	31	0.028	1.8e+02	2.5	0.0	23	46	1894	1917	1891	1925	0.81

Sequence Information

Coding Sequence: ATGAGTTCTATCCTgcaaaaaactgaaataaaaatcGAAGCCCTCTGCCGAACATGCTTGTCGAAGGAGATTGAATTGCTGTCGGTATTCGATGCGTGCCCTGGGGACGAGGAAGTCACACTGGACAGCGTCATCGCAACAATTACCGGCGTTAAGATCGTGGCCGGCGATGGCTTGCCCGCGACGGTGTGCCGAGAGTGTTCGGAGCAGGCGCACAGCGCGTTCTCGTtccgcgggcgcgcgcggcgggccgaCGACGCGCTGCGCGGCCTGGTGCGCGTCAAGATGGAGGAAGCGGAGCCGGCTGTGGATGTCAAGATCGAGGAGTTCAGCGGCGATATCCATGATGACTACCTGGATATGGACTTCACCATGACACTGCCCAATGGTGACGAACACCCGCCTGATTTTGCGGCGGACGCGGTAGGCGAGTGCGACGAGGGCACATACTGTCCGGTGTGCGGCGCTAGTTTTGAGGACGCGGCGGGCCTGACGCGCCACGTGTGGCAGCGGCACGCGGACCTCATGGGCCCGAAGAAGCGGGGGCGGCCCAAGCAACTGCTCACTAGCACGATCCTGAGCCGCATGTCGGGGcgagcgggcgcgggggcggcggcgggggcggcgggggcggcgggggcggcgccgCAAGCGTGCGCGCTGTGCCGCCTCGCGGTCGACTCGCACGACGACCTGGCGACGCACATGATGCTGCACAAGGACGAGAAAGTTCTAAGCTGTCTGTGCTGCAAGAAGATGTACCTCCAGCGAGAGGACTTCGACCGTCACAGCTGCGCGCCCGCAGGCCACGAGGAGCACCAGGTTGACCACGGCGCGGCATGCGCAGTTGAGATCGCTCTACAGGAGCTACTGGCCCGCGGAGACTCGgTGGAGGTGTGCGACGGCTGCGGCGGCGTGttcggcggcgcgggcgagctggcgcgcCACCGCGACGCGGAGCACCCCGAGCGGTCGCTGCGCTGCGGGCACTGCCTCAAGGTGTTCGCGTCcctgcgcggcgcggcgcggcaccGGCGCTCGTGCGCGCTGGTGGAGCGCGCGCacgcgtgcgcggcgtgcgggCTGCGCTTCCAGCACGCGATCACGCTGAACAAGCACATCCTGCGCTCGCACGCCGGCCTGCCGGTCGCCGTGCGCttccccgcgcccgcccccgcgcccgcccccgcctccgcgcccgcgcccgcgcccgccggcacTCGCGCCGCACGGGCGGGCGTCGCGCTGGTGTGCGACACGTGCGGACGCACTTTCCGCAGGAAAGAGTTGCTATTGAGGCACGCCAAGCTTCACCAGCCTGACGCCAAGAGCTTTGAATGCGACGTGTGCAAGAAGCGGTTCAACCGGAGGAACAACTTGCGGTCCCACATGCGCACGCAcgaggcgggcgcgcgggcggcgggcgcggcgggggcggcggcggcggggggagCGGCCAGCTCGTGCCTGTGCCTGTACTGCGGCCGCGGGTTCTCCAACTCCTCGAACCTTATAGTGCACATGCGCCGCCACACCGGCGAGAAGCCGTACAAGTGTGACTTCTGCGGCAAAGGCTTCCCGCGCTCGTCGGACCTGCAATGCCACCGGCGCTCCCACACCGGCGAGAAGCCCTGCGTGTGCGGCGTCTGCGGAAAAGGGTTCTCCCGCAGCAACAAGCTGTCGCGGCACATGCGCGTGCACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACCGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACCGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagATGCCTGTACACACCGGCCTCAAGCCGTACAAGTGTCCGTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGGCACACGGGCGACAAGCCGTAcgtgtgcgagctgtgcggcgaccggttcatacagGGCACAGCGCTGCACAACCACCGTCGCGCGCACGGCCACTTCCCGCCGGCAGggggcgcgcccgcgccgccctacgccgcgcgcgcgctgcccgactGA
Protein Sequence: MSSILQKTEIKIEALCRTCLSKEIELLSVFDACPGDEEVTLDSVIATITGVKIVAGDGLPATVCRECSEQAHSAFSFRGRARRADDALRGLVRVKMEEAEPAVDVKIEEFSGDIHDDYLDMDFTMTLPNGDEHPPDFAADAVGECDEGTYCPVCGASFEDAAGLTRHVWQRHADLMGPKKRGRPKQLLTSTILSRMSGRAGAGAAAGAAGAAGAAPQACALCRLAVDSHDDLATHMMLHKDEKVLSCLCCKKMYLQREDFDRHSCAPAGHEEHQVDHGAACAVEIALQELLARGDSVEVCDGCGGVFGGAGELARHRDAEHPERSLRCGHCLKVFASLRGAARHRRSCALVERAHACAACGLRFQHAITLNKHILRSHAGLPVAVRFPAPAPAPAPASAPAPAPAGTRAARAGVALVCDTCGRTFRRKELLLRHAKLHQPDAKSFECDVCKKRFNRRNNLRSHMRTHEAGARAAGAAGAAAAGGAASSCLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCGVCGKGFSRSNKLSRHMRVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQMPVHTGLKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQGTALHNHRRAHGHFPPAGGAPAPPYAARALPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00277508;
90% Identity: iTF_00277508;
80% Identity: iTF_00277508;