Cpal014712.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000227.1:8567-11074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00046 0.027 15.1 3.7 1 23 8 31 8 31 0.95 2 19 2.4e-05 0.0014 19.1 1.0 2 23 38 60 37 60 0.96 3 19 2.3e-05 0.0013 19.2 2.1 2 23 69 91 69 91 0.96 4 19 0.067 3.9 8.2 0.3 2 23 100 122 99 122 0.93 5 19 0.0093 0.54 10.9 0.1 3 23 131 151 130 151 0.93 6 19 0.3 18 6.2 7.1 2 23 160 181 159 182 0.94 7 19 0.019 1.1 10.0 2.8 1 23 188 211 188 212 0.95 8 19 4.4e-05 0.0025 18.3 2.3 1 23 219 241 219 242 0.95 9 19 0.00072 0.042 14.4 0.0 5 23 255 274 253 274 0.95 10 19 0.0043 0.25 12.0 1.5 1 23 305 328 305 328 0.95 11 19 0.35 21 6.0 1.0 2 21 336 355 336 356 0.91 12 19 0.051 3 8.6 0.4 3 23 366 387 365 387 0.96 13 19 7.1e-06 0.00042 20.7 4.2 2 23 415 437 414 437 0.95 14 19 1.2e-05 0.00071 20.0 4.9 1 23 443 466 443 466 0.96 15 19 1.9e-05 0.0011 19.4 0.4 1 23 503 526 503 526 0.97 16 19 2.6 1.5e+02 3.2 0.1 2 11 534 543 533 547 0.85 17 19 0.023 1.4 9.7 0.8 2 23 566 588 566 588 0.97 18 19 0.46 27 5.6 0.3 2 13 609 620 608 624 0.88 19 19 0.042 2.5 8.9 0.3 1 13 638 650 638 653 0.89
Sequence Information
- Coding Sequence
- ATGTTTCACAGCCAGCCAGAATTCGTGTGCGCCCTCTGCGAGCGCACGTTCGCGATGAAACACAACCTTCAGAAACACATAACCAACTGCCATATCGACGACGGGGCGTGCGTTTGTTCTATATGCGAGAAGAAGTTCGCGAGCCCTCTGGGCCTGAAGCGGCACCTGAGGAGAGGCCACAATAGGTTCATGCGGCCGCAGCCGGAGTGCGAGCATTGTGGACAGACCTTCGAGCGGAAGGAGAACATTGTCAGGCATATGAAGCAGCGGCATGCGTTGGGTTCAACGCCATCCATACCTTGCGAGACGTGCAACGAGAAGTTTTCAAGTGATATAATCCTTAAACGTCACATCGACAAGTTCCACAAGGAAAATGTGGAATTTCAGGCTTGCGATGAATGTAACCTGGTGTTCCGCAAGGAATCTCTGATTGCTCACGTCCTGAATGACCACAAGGTGTCTGAGACCGAAATAGTCAGCTGTCAGTTCTGCAGCAAGGTGTATTCCTGCCACAAGAACCTAAAACGGCACATCGTGTCCCATCATGGCACGAATGAGGAATTCAAGTGTATATTCTGCCCCAAGAAGCTCACCTCAAACCTGGGCTTGAGACGACACATAAAGACCTCTCATCATATTGACATGCCTAGAGAATTCAGTTGCGACTACTGCTCAAAATCGTTTTCCCAGCAGCCTTATCTCGATACACACATCTCTCTGCACCATAAGGGTAAGCGAAAGAACCCGTTGAAATTCCCTTGCGAATGCGGCAAAGTGTTTGAAACCGAGCCAGAGTTAAGACAACACGTCAAAACTGAACACAGCCTCGACGTTTTCTACTCTTATTGCAAAAACTCCTTCCTTCGCACGGCGAATATTACGGGAGACAATGCAAAGAAACAAACTGCCGGTCACGACTGCGAGGTGTGCCAGAAGCATTTCGGCGCGCTTTACGATCTACGGATACATTTAAAAGTCAACCACAACATGGAATTCTCGCTAGAATACTGCAACGTTTGCTTTTCGAAATTCTACAGTAAGGAAACCTTGGATAAGCataaggaaacctgcgtgccgcCCGACACAGAGAAGAATTGCGGTCTCTGCGATAAACTGTTTACGGAAGCAGTGAGTCTCAAATTTCACATGAAAGTATTCCATACGCCGGAACAAGTGATGCTTCTCAATGGAAGCGCTGACTTTCTCGACTCGACGGACGACGAGGAAGCTCAGAAGGAATCTAGATGCGAGCACTGCGACAAAGTATTCACTTCCGAAGGAAACCTTAAGAAGCACCATAAATACGTCCACTTGGGCGTGCAAAGATGCAAGTGTCCTGAGTGCGGTACCCATTTCAACGACAGAAGGAATATGCGACGGCACATCCGCATAAAGCATCCTCACTGCCCTCGGTTCCCACTGTGCCGCTTCTGCCGCAAACGCTTTGAATCCGCCCAAGCCTGCCATATGCACCTCCAGCGAGCCCACTCCTTCGACACCGGCGGGTTCCCTTGCGACAAATGCTCTCTATCCTTCGCCAACAGCGCTTCGCTTAACTCTCACATCAAGAGCAAACATGTCAATGAAGAGGAACTCCTGAAATGCGGGGATTGTGGCCTATTCTTTGAATACGAGACACTTGAGCCACACAAGTCGAAGTGCGGGAAAACGTTGGACACGCAACTTACATCACCAAAGTGCGTTATTTGCATGAAGGAGTTCAGCGCAGAGTTAACACTGAAGCGTCATATCAGACGATTCCATCAAGAATTCGATCCGAAGGAGTTGATTACATTGGGATACAGCAACAAACCTTTCTTCGTTGAATGTAAGGACTGCTTAAAGAAGTTTTCAGATAATGAGGTCtataaaatctatttgaatAACAAGCGGTTCAGGGATTTTATAGTATTCAAATGCGAGACGTGTGGCGAATCGTTCAGCGTTCCTGAGTACGCCATTGTGAGGCATAAGAGGGCGATGGAGGCACGAAAGAAGAAGCGACCGCCTCATGTTATAAAGGAAATGGAGAGATCTAACGCGCTAACGAGACTCCCTGGTGAGGGTCTAAGGGCATTTTTGAAAAGAAAACTGAAACGTTAA
- Protein Sequence
- MFHSQPEFVCALCERTFAMKHNLQKHITNCHIDDGACVCSICEKKFASPLGLKRHLRRGHNRFMRPQPECEHCGQTFERKENIVRHMKQRHALGSTPSIPCETCNEKFSSDIILKRHIDKFHKENVEFQACDECNLVFRKESLIAHVLNDHKVSETEIVSCQFCSKVYSCHKNLKRHIVSHHGTNEEFKCIFCPKKLTSNLGLRRHIKTSHHIDMPREFSCDYCSKSFSQQPYLDTHISLHHKGKRKNPLKFPCECGKVFETEPELRQHVKTEHSLDVFYSYCKNSFLRTANITGDNAKKQTAGHDCEVCQKHFGALYDLRIHLKVNHNMEFSLEYCNVCFSKFYSKETLDKHKETCVPPDTEKNCGLCDKLFTEAVSLKFHMKVFHTPEQVMLLNGSADFLDSTDDEEAQKESRCEHCDKVFTSEGNLKKHHKYVHLGVQRCKCPECGTHFNDRRNMRRHIRIKHPHCPRFPLCRFCRKRFESAQACHMHLQRAHSFDTGGFPCDKCSLSFANSASLNSHIKSKHVNEEELLKCGDCGLFFEYETLEPHKSKCGKTLDTQLTSPKCVICMKEFSAELTLKRHIRRFHQEFDPKELITLGYSNKPFFVECKDCLKKFSDNEVYKIYLNNKRFRDFIVFKCETCGESFSVPEYAIVRHKRAMEARKKKRPPHVIKEMERSNALTRLPGEGLRAFLKRKLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277513;
- 90% Identity
- iTF_00277513;
- 80% Identity
- iTF_00277513;