Cpal004966.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000055.1:15526-40752[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.7e-07 0.00016 21.9 0.2 3 47 256 297 254 317 0.83 2 9 8.7e-06 0.0029 17.9 0.2 47 109 394 463 385 464 0.79 3 9 1.2e-17 4e-15 56.1 0.1 6 107 488 588 484 591 0.92 4 9 0.17 58 4.0 0.0 70 107 611 649 607 652 0.85 5 9 0.1 35 4.7 0.0 69 106 671 709 666 713 0.87 6 9 0.96 3.2e+02 1.6 0.1 82 107 716 741 706 744 0.83 7 9 0.13 44 4.4 0.0 69 107 763 802 758 805 0.84 8 9 0.17 58 4.0 0.0 70 107 825 863 821 866 0.85 9 9 0.17 58 4.0 0.0 70 107 886 924 882 927 0.85
Sequence Information
- Coding Sequence
- ATGGATAACGAGCAACCGCACCAGGAGCTGGTCAAATGCGTGGTGGTCGGCGATACGGCCGTCGGCAAGACTCGGCTGATATGCGCGCGCGCATGCAACAAGCACGTGTCGCTCTCGCAGCTGATGACGACACACGTGCCCACAGTCTGGGCGATAGACCAGTATAGGATCTACAAGGACGTACTGGAAAGGTCATGGGAAGTTGTTGATGGGGTGAACGTCTCGCTCCGGCTATGGGATACGTTTGGCGACCATGAAAAGGATAGGCGGTTCGCTTATGGCAGATCAGATGTAGTGTTACTGTGCTTCTCAATAACCAACCCAGTTTCGTTGAGGAACTGCGGCGCTATGTGGTATCCGGAGATAAGGCGCTTCTGTCCAAACACCCCGATTCTGCTCGTGGGGTGTAAGAACGACCTCCGCTATATGTATAGAGATGAAACATACCTCAACTATTGTAAGGATCGGAGCCCTTTCATCAgggCACCTAGAAAAAGCGACCTCGTTATGCCCGACCAGGGTAGGGCGCTGGCACACGAGTTCGGCATATACTACTACGAGACATCCGTGTTTACTTACTACGGCGTGAACGAGGTGTTCGAGAACGCGATCCGCGCGGCGCTCATAGCGCGCCGGCAGCAGCGGTTCTGGATGACCAATCTGAAGCGGGTTCAGAGGCCGCTTTTGCAGGCGCCCTTTCGACCACCGAGACCGATGGAACCCGAGGTTGTGGTGGTGAACAGTGTGTACCTGGAAAATATGACGTCATTGCTGTGTCAACAGTACTACTCGGACATGGTGATAATATGCGGCGCTAAGGGTTTCCCCGTCCACCGGTTCATGATGGCGGCGGCGTGCGAGGCGTTCCACCGGCTTCTTACTACTGACTGCGCGAGCCTATCGGCTGAACTGGCCCGCAGCTCCAGCGAGAGTAGCATGGTAAGCAGCATGGGTGAAGCTACAGCGGGAGAGTTTAACGAAGACACGGAATATCTGATCCGACAAGACCAGGCAAAGCAAATGAGGGTATGGGACCAGATCAAGAGGCGTTCTTCCTGCCAGATCCTGCCTTTGAGTGACAGCTGCAAGAAACCGCCGGATTTGTACAGGGAGGTCAACCACCCCGCCATCAATTCGATCAGAGTTGTTAAGTGCGACAAAATCCAGCACGCAACATCGCAAACACAAACTATAGTGACAATGAGCAAGATTATCTCCCAAGCCGTCATGCAGGAGATAATCAACTTCATATACACCGGTTCGATGGATAGTAGTGCCTTCAAACAGCAGTCCGCTGCTATCGGATTACTACTGGAGATTCGTCAAGCGGCCGACTTGCTCGGCTTCCACGAGCTGACCAAGCTGTGTCAGTTCATACTGGATCAACACCTGCTGTTCGACAAGGGGTTTATGCTTCAGTTCCACACTCCGTTCCCCCTACGCCTGCGCGACATGTACGTAGAACGCAATCTGTTTGCGGACGTAACGTTTGATCTGGACGATGGCATCCACCTGGCGCATAGGGCGATACTGATGGCGCGCTGCGACCCCATGAAGGCAATGTTCCAAGGGCACTTTCGGGAGAGCACTTCCCGGGTGATATCCTTCCCCGGTGTGAAAATGTACGCGTTCCACATACTTCTCTGCTACATATACTCGGACAAGATACCCGCGGTGGAGCCGTCGCGCTGCCTGCAGCTGCTCGAGCTGGCCAACCGGCTGTGCATGAACCGGCTGGTGTCGCTGCTGGAGGCGGAGGTGATCGACCGCCTGCAGCACCAGGACAGCACCAGGACAGGTGACGGCAACCTTTGGCACGTCCTCCCGTGCTTCATACACTCGGACAAGATACCCGCGGTGGAGCCGTCGCGCTGCCTGCAGCTGCTCGAGCTGGCCAACCGGCTGTGCATGAACCGGCTGGTGTCGCTGCTGGAGGCGGAGGTGATCGACCGCCTGCAGCACCAGGACAGCACCAGGACAGGTGACGGCAACCTTTGGCACAACCTCCCGTGCTTCATACACTCGGACAAGATACCCGCGGCGGAGCCGTCGCGCTGCCTGCAGCTGCTCGAGCTGGCCAACCGGCTGTGCATGAACCGGCTGGTGTCGCTGCTGGAGGCGGAGATACCCGCGGCGGAGCCGTCGCGCTGCCTGCAGCTGCTCGAGCTGGCCAACCGGCTGTGCATGAACCGGCTGGTGTCGCTGCTGGAGGCGGAGGTGATCGACCGCCTGCAGCACCAGGACAGCACCAGGACAGGTGACGGCAACCTTTGGCACAACCTCCCGTGCTTCATACACTCGGACAAGATACCCGCGGTGGAGCCGTCGCGCTGCCTGCAGCTGCTCGAGCTGGCCAACCGGCTGTGCATGAACCGGCTGGTGTCGCTGCTGGAGGCGGAGGTGATCGACCGCCTGCAGCACCAGGACAGCACCAGGACAGGTGACGGCAACCTTTGGCACGTCCTCCCGTGCTTCATACACTCGGACAAGATACCCGCGGTGGAGCCGTCGCGCTGCCTGCAGCTGCTCGAGCTGGCCAACCGGCTGTGCATGAACCGGCTGGTGTCGCTGCTGGAGGCGGAGGTGATCGACCGCCTGCAGCACCAGGACAGCACCAGGACAGGTGACGGCAACCTTTGGCACGTCCTCCCGTGCTTCATACACTCGGACAAGATACCCGCGGTGGAGCCGTCGCGCTGCCTGCAGCTGCTCGAGCTGGCCAACCGGCTGTGCATGAACCGGCTGGTGTCGCTGCTGGAGGCGGAGGTGATCGACCGCCTGCAGCACCAGGACAGGGTGTGCGGTGAAGACGATCAAGTGGTTGAAATAGCTCTGTCCCTGTTAGAACCTGTCaagCTCCACAACGCCCACAACCTAGCCGACTGGTGCATGTGGCGGCTGTGCGCCGCATACGACCGCGTGTGCCGCGCCAAGCACCTGTCGCCCGCGTCGCGCGACTACCTCTGCGACAACCGCTGGCCGCCCGTCTGGTTCGTGAAAGAATACGACTACTATCAAAAGTGTCTGATGGAGCAGAACAAGGAGCAGAAGGAAATCCGGCCGGCGACTTCGCTGCAGGCCAGCCAGCAGACCGGCTGCTTGTGCTTCACAAGCAAGGTGCGGCGCGAGAGCGGGCCGGCCGACGCGAGCACGGCGCTGTGTCGCGGCTCCCCGcagccggcgccgccgccgctctgA
- Protein Sequence
- MDNEQPHQELVKCVVVGDTAVGKTRLICARACNKHVSLSQLMTTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSITNPVSLRNCGAMWYPEIRRFCPNTPILLVGCKNDLRYMYRDETYLNYCKDRSPFIRAPRKSDLVMPDQGRALAHEFGIYYYETSVFTYYGVNEVFENAIRAALIARRQQRFWMTNLKRVQRPLLQAPFRPPRPMEPEVVVVNSVYLENMTSLLCQQYYSDMVIICGAKGFPVHRFMMAAACEAFHRLLTTDCASLSAELARSSSESSMVSSMGEATAGEFNEDTEYLIRQDQAKQMRVWDQIKRRSSCQILPLSDSCKKPPDLYREVNHPAINSIRVVKCDKIQHATSQTQTIVTMSKIISQAVMQEIINFIYTGSMDSSAFKQQSAAIGLLLEIRQAADLLGFHELTKLCQFILDQHLLFDKGFMLQFHTPFPLRLRDMYVERNLFADVTFDLDDGIHLAHRAILMARCDPMKAMFQGHFRESTSRVISFPGVKMYAFHILLCYIYSDKIPAVEPSRCLQLLELANRLCMNRLVSLLEAEVIDRLQHQDSTRTGDGNLWHVLPCFIHSDKIPAVEPSRCLQLLELANRLCMNRLVSLLEAEVIDRLQHQDSTRTGDGNLWHNLPCFIHSDKIPAAEPSRCLQLLELANRLCMNRLVSLLEAEIPAAEPSRCLQLLELANRLCMNRLVSLLEAEVIDRLQHQDSTRTGDGNLWHNLPCFIHSDKIPAVEPSRCLQLLELANRLCMNRLVSLLEAEVIDRLQHQDSTRTGDGNLWHVLPCFIHSDKIPAVEPSRCLQLLELANRLCMNRLVSLLEAEVIDRLQHQDSTRTGDGNLWHVLPCFIHSDKIPAVEPSRCLQLLELANRLCMNRLVSLLEAEVIDRLQHQDRVCGEDDQVVEIALSLLEPVKLHNAHNLADWCMWRLCAAYDRVCRAKHLSPASRDYLCDNRWPPVWFVKEYDYYQKCLMEQNKEQKEIRPATSLQASQQTGCLCFTSKVRRESGPADASTALCRGSPQPAPPPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -