Cpal000788.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- USP
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000011.1:5525829-5553151[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6.2e-15 4.1e-11 43.1 0.3 210 317 244 363 233 369 0.70 2 5 1.7e-06 0.011 15.3 0.0 300 328 369 397 365 406 0.90 3 5 9.5e-07 0.0062 16.1 0.0 299 329 439 469 425 485 0.86 4 5 1e-06 0.0067 16.0 0.0 299 328 510 539 496 555 0.87 5 5 2.5e-19 1.6e-15 57.5 0.0 299 392 581 674 567 679 0.93
Sequence Information
- Coding Sequence
- ATGTCGAGCTTGGCGAAGAAGGATAAGCCGACGATGTCGGTGACAGCGCTGATCAACtgggcgcggccggcgccgcCGGGCCCCCAgcagccgccgcccgcggcCCCCGCGCCCAGCGCCAACATGCTGCAGCCCCTTGGGACTCCCTCCAACACCGCCAACGTTGATTTCGACAtgcaatGGCTGAACCTAGAGGCGGGGTTCATGTCCCCGATGTCGCCGCCGGAGATGAAGCCGGACACGGCGATGCTGGACGGCATGCGGGACGACGCCACGTCGCCACCGGCGCTGCGCAGCTACCCGCCGAACCACCCGCTCAGCGGCTCCAAGCACCTCTGTTCGATATGCGGCGACCGGGCGTCGGGGAAACATTATGGCGTCTACAGTTGCGAAGGTTGCAAGGGCTTCTTCAAGCGGACGGTGCGGAAGGACCTCACATACGCGTGCCGGGAGGACCGCAACTGCATCATAGACAAGCGGCAGCGGAACAGATGTCAGTTCTGCCGATACCAGAAATGCCTCGCGTGCGGTATGAAGCGCGAGGCGGTGCAGGAGGAGAgacagcgcgcggcgcggggggcaGAGGACGCGCATCCCAGTAGTTCCGTGCAGGAGCTGTCGATCGAGCGGCTGATCGAGATGGAATCGCTGGTAGCGGACCCGAGCGAGGAGTTCCAGTTTCTACGTGTAGGGCCCGACAGCAACGTGCCGCCGCGGTACCGCGCGCCGGTCTCCAGCCTTTGCCAAATAGGCAACAAGCAGATCGCGGCGCTGGTGGTGTGGGCGCGCGACATCCCGCACTTTGGGCAGCTTGAGCTGGACGACCAGGTGCTGCTCATCAAGGCCTCCTGGAACGAGCTGCTCCTCTTCGCCATCGCCTGGCGGTCCATGGAGTACCTGGAGGACGATAGAGAGAATATGGACGGCACGCGAACAGTGGCGCCCCCGCAGCTCATGTGTCTAATGCCcgGCATGACGCTGCACCGCAACTCTGCGCTGCAGGCGGGCGTGGGGCAGATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAGTACATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAGTACGTCGCGCTGAAGGCCATCATCCTGCTCAACCCCGGTACGTgctccatacatccatccatccatccatcacgtgGGGCAGATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAGTACGTCGCGCTGAAGGCCATCATCCTGCTCAACCCCGGTACGTgctccatacatccatccatccatacatcacgTGGGGCAGATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAGTACGTCGCGCTGAAGGCCATCATCCTGCTCAACCCCGGTACGtgctccatccatccatccatccatccatcacgtgGGGCAGATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAATCTTCGACCGCGTGCTGTCCGAGCTGGCGCTCAAGATGCGCTCGCTGCGCATGGACCACTCCGAGTACGTCGCGCTGAAGGCCATCATCCTGCTCAACCCCGATGTGAAAGGACTGAAAAATCGACAGGAAGTTGACGTTTTACGAGAAAAGATGTTCTCGTGCCTGGACGAGTActgccggcgcgcgcgcggcggcgaggaGGGCCGCTTCGCGTCGCTGCTGCTGCGGCTGCCGGCGCTGCGCTCCATCTCGCTCAAGAGCTTCGAGCACCTGTTCTTCTTCCACCTGGTGGCCGACGGCAGCATCAGCGGGTACATCCGCGACGCGCTGAGGAACCACGCACCACCCATCGACGCCAACTCCATACTGTAA
- Protein Sequence
- MSSLAKKDKPTMSVTALINWARPAPPGPQQPPPAAPAPSANMLQPLGTPSNTANVDFDMQWLNLEAGFMSPMSPPEMKPDTAMLDGMRDDATSPPALRSYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQFCRYQKCLACGMKREAVQEERQRAARGAEDAHPSSSVQELSIERLIEMESLVADPSEEFQFLRVGPDSNVPPRYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELDDQVLLIKASWNELLLFAIAWRSMEYLEDDRENMDGTRTVAPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELALKMRSLRMDHSEYIFDRVLSELALKMRSLRMDHSEYVALKAIILLNPGTCSIHPSIHPSRGADLRPRAVRAGAQDALAAHGPLRIFDRVLSELALKMRSLRMDHSEYVALKAIILLNPGTCSIHPSIHTSRGADLRPRAVRAGAQDALAAHGPLRIFDRVLSELALKMRSLRMDHSEYVALKAIILLNPGTCSIHPSIHPSRGADLRPRAVRAGAQDALAAHGPLRIFDRVLSELALKMRSLRMDHSEYVALKAIILLNPDVKGLKNRQEVDVLREKMFSCLDEYCRRARGGEEGRFASLLLRLPALRSISLKSFEHLFFFHLVADGSISGYIRDALRNHAPPIDANSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277455; iTF_00277401; iTF_00277403;
- 90% Identity
- iTF_00277455; iTF_00277401; iTF_00277403;
- 80% Identity
- iTF_00277455; iTF_00277401; iTF_00277403;