Cpal015850.1
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000274.1:267795-284207[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-12 7.4e-09 35.2 0.1 7 50 222 267 218 270 0.87 2 4 1.9e-12 7.5e-09 35.2 0.1 7 50 271 316 267 319 0.87 3 4 1.9e-12 7.3e-09 35.3 0.1 7 50 320 365 316 369 0.87 4 4 1.7e-15 6.7e-12 45.0 0.0 7 70 369 430 365 435 0.89
Sequence Information
- Coding Sequence
- ATGTCCGAAGAAATGGCGGTGACTGATAACGCGACGACCGAACAGAGCCAAGTTCCAGGCGATGAAGATGTTGTGGCGGGAGCTGGTGAGGCAGTAGAGTCGACTTTGGAGCCCAAGATGGAAGCGGCTGAAGAGGAAGCGGGAGAAACACCCAAATCTGAAGAACTGGGGAAGAAGGAGGTTAAACGAGAAAAGAATCTTGATGAAGGACCACAAGCAGAAACTAAAGAGGATCTTAATGCAAACATGCCTATGGATGATACTGATGGAGAATCTACTGGGTCTATTAGCGGCAAGCGAGGGGTTAAGAGGCGGGCCTCCGCAGCGCTGAGTGACATTGATGAGAGTGAAGAATTTAAAGGCTTCGACCAGGTTGAGGAAGGAGCATTGGAAGAGTACAGTAAAGCTGTCgAACGTTTAGAAGCAGAAGTGTCTGAAGCAGTGAAAACCCTCACACCACTGAGATGCATCAGGGCATTATCTTCTACTTCTGTACGAGCAAGCAAACGTGCACGACAGGACaccgACGGATCGCGTCCATCATCAGCGCTCTCGTGCCGCTCGGATGGCGACGGTGCTATTTCAACTGATGCATCGATGTCCCCCGCCGGCgcgagcggcgggcgcgggcggcgctcCACCGTGGAGATCTCGTCGCCGCTGCTGCGCGTGCCGCTCGAGCGCGGCTGGAAGCGCGAGCTGGTGTaccgcgccgcgctcgacgcGCACTCGCGCCGCAACGCGGACATATACTACTACACGCCCGCCGGCAAGAAGCTGCGCTCCACCAGGGAGATCTCGTCGCCGCTGCTGCGCGTGCCGCTCGAGCGCGGCTGGAAGCGCGAGCTGGTGTaccgcgccgcgctcgacgcGCACTCGCGCCGCAACGCGGACATATACTACTACACGCCCGCCGGCAAGAAGCTGCGCTCCACCAGGGAGATCTCGTCGCCGCTGCTGCGCGTGCCGCTCGAGCGCGGCTGGAAGCGCGAGCTGGTGTaccgcgccgcgctcgacgcGCACTCGCGCCGCAACGCGGACATATACTACTACACGCCCGCCGGCAAGAAGCTGCGCTCCACAAGGGAGATCTCGTCGCCGCTGCTGCGCGTGCCGCTCGAGCGCGGCTGGAAGCGCGAGCTGGTGTaccgcgccgcgctcgacgcGCACTCGCGCCGCAACGCGGACATATACTACTACACGCCCGCCGGCAAGAAGCTGCGCTCCACAAGGGAGGTTGCAGAACAATTGTCGGGCACAGGACTCACGTTGGACAACTTTTCGTTCTTCAAGGAACCACTCGGAGTTGATGATCCGGAGAAGGAGATTATACGCGACGCGAAGTTGATGCGTCGCGTGGAGTCCCCGGTgctggcgcccgcgccgcccgtgGAGGGCAAGCGCACGCCCAGGCCCAAGGCGCCCAAGGGGGCCAGCCCCGAGCCCGCCACGCCCAAGTCGCCGCCCGCCAAGCTCAAGGTGAAATCAGTGGGCTCCCGTCTGAACAACAACGGCGCGGTGACACCGAAGCAGCCGCgcaagccgcagccgcagccgacGGCCGCGTCGGCCGCAGCGGCCGTcccccccgccgcgccgcccgcgaccCCCGCGACCCCGGCGACCGCCACGCTGGCCGACAACAACAACAGTACGGCTTGGAAGAAGCCCAGGCCCGCGCCGCCCACGGTGACGTCGCGCccgtcgcccgcgcccgcgcccgcacccgCGCCATCGCCCGCTACGGAGTCGTCCCCGCGCCAGCCGGTGCAGCCGTGCTCGATGACGTGCGGGCGCGGCGTGCCCTCGCTCGCGTGCTTCGCCTGCCTCTGTCTGTACCACCCCGCGTGCGTCGGCCTCGCCAGCATCACGCGGGACCCCTTCTACTGCAAGAACTGCCGTAAGTCGTCCCCACCGCTCGAGCCGCACAAGGCGGGCGCGACCGTCCCGACCGCGTCGCCCGTGCCCGCGCCCGCCTTGCCCGGGCCCGCGCCGCAGCGGCGACCGAAcgtgcccgtgcccgtgccAGTGCCGGTGCCAgtgcccgtgcccgtgcccgtgcccgtgccGGCGAAGGGCAATAGGGGGGACAAGCGGGTGCTGCTGCGGATGAAGGTGGCCGGCGGCGGGCCGGACGGGTCGCGCGTGTGGGCGGTGACCAAGGGCCCCGCGACGGCCTCCAgcccggcgccgccgccgcccgcgccacccgcgcccgccgcgccgccccccgcgcccgcaccggcgcgcgcgcccgcgcccgcgcccgcagcgcagcccggcggcgcgggcgcgggcgcgggcgcgcgacCTAACCTGCCGCAGTCGCTGGCGGTGCTCAACGGCCGCCGGTTCATCGTGGtgccgcgcgcgctcgtgcAGCCCGCGCATATTTGA
- Protein Sequence
- MSEEMAVTDNATTEQSQVPGDEDVVAGAGEAVESTLEPKMEAAEEEAGETPKSEELGKKEVKREKNLDEGPQAETKEDLNANMPMDDTDGESTGSISGKRGVKRRASAALSDIDESEEFKGFDQVEEGALEEYSKAVERLEAEVSEAVKTLTPLRCIRALSSTSVRASKRARQDTDGSRPSSALSCRSDGDGAISTDASMSPAGASGGRGRRSTVEISSPLLRVPLERGWKRELVYRAALDAHSRRNADIYYYTPAGKKLRSTREISSPLLRVPLERGWKRELVYRAALDAHSRRNADIYYYTPAGKKLRSTREISSPLLRVPLERGWKRELVYRAALDAHSRRNADIYYYTPAGKKLRSTREISSPLLRVPLERGWKRELVYRAALDAHSRRNADIYYYTPAGKKLRSTREVAEQLSGTGLTLDNFSFFKEPLGVDDPEKEIIRDAKLMRRVESPVLAPAPPVEGKRTPRPKAPKGASPEPATPKSPPAKLKVKSVGSRLNNNGAVTPKQPRKPQPQPTAASAAAAVPPAAPPATPATPATATLADNNNSTAWKKPRPAPPTVTSRPSPAPAPAPAPSPATESSPRQPVQPCSMTCGRGVPSLACFACLCLYHPACVGLASITRDPFYCKNCRKSSPPLEPHKAGATVPTASPVPAPALPGPAPQRRPNVPVPVPVPVPVPVPVPVPVPAKGNRGDKRVLLRMKVAGGGPDGSRVWAVTKGPATASSPAPPPPAPPAPAAPPPAPAPARAPAPAPAAQPGGAGAGAGARPNLPQSLAVLNGRRFIVVPRALVQPAHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -