Cpal004079.2
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- PAXBP1
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000043.1:1079877-1096966[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00019 0.63 9.7 0.0 3 39 516 552 514 554 0.92 2 4 0.03 98 2.5 0.0 17 39 554 576 551 580 0.89 3 4 0.011 36 3.9 0.1 13 39 574 600 563 602 0.86 4 4 6.7e-19 2.2e-15 57.1 0.3 3 190 739 903 737 914 0.76
Sequence Information
- Coding Sequence
- ATGTCCTTGTTTCGCAAGCCAAAGAAAATTCAGCGTCGCATGTTCTGCGCTGACGACGACGAAGATGGAGATCCGgagccgccgccaccgccgatGATCAGTCACAATAAGAAAGAGAACAAACCCCTCAAATCTACTGCTTTGTTAAGTTTTGCGGACGAAGAAGAGGATGGCGAAGTTTTCAAAGTGAAGAAGTCATCTCAGAGCAAACGGTTGTCCAAACGCCGTGACAAGGAGAAAAAGCGGGTTCCAGACAGTGAAAGTAACAAATTAGACAGTAATGGCTATGAGGAGACGCAGCCGTCACCCGAGAAAACGAAGGTGGAAGATGGCAAGCGAAAAAAGAAGATAACCCTCGACGGGTTGATCCTATCGGGTCGGGAGGCGCTGGCGGCCGACGGGGCCGGTGACGTCACCGACGGCGAGGGGGAAGAGGAAGACGACAGGGGGTTCCACCAGTACCGGCCGGAGTCGGTGCGGGCGGCGCTCGCCGTGGCGCCCGGCCATATCCCGGACGCGGCCCTCATCCACGCCGCGCGCAAGACCCGACAGCAGGCTCGCGAGCTGGGCGACTTCGTGCCGGTCCAATCGGAGGCGCCGCCGGGCTCTCGGCTGGTGCGGGACGACGACGGAGACGACGACGACGAAGAGGAGGGCAGGATCCAAGTGAGGGGGCTCGAGCTGCCCAGCGACAAGCCTCAGCGCGGCACGGCAGCGGCGGCGTTGGACGAGGAGCTGGACAGCGAGGCGGAGCAGTGGGAGGAGCAGCAGCTGCAGAAGGCGATGCCCGCCATCGGTGACGTCACCGTGTTGTCGGAAGTCGCAATGGATATGAACCCGTTCGCcgtggcgccgccgccgccgcgcatgGAGGACGGGCCGCCGCACCTGCGAGCGCTCAACGCGCCCGgacacgcgccgcccgcgtccgcGCACGAGCTGCTCGAGGCGTTGCATCACAGACTGGAAGAGTTACAAATGAGCCGGTCGTCGATGGCCGCCAAGAAGGAGGAGCTCAGCTcgcggctgctggcggcggcgcgcgtgcgcgaGTCGCGCGCGGCCCGCTGCGCCGGGCTCGACGCGGCGTACAAGcgggcgcaggcggcgcgcgggtaCGTCACCGACCTCGTCGAGTGCCTGGACGAGAAGATGGcgcagctggaggcgctcgAGGCGCGCGTGCTGGGCGTGCACCGCAAGCGCTGCGCGCTGCTGGTGGAGCGCCGGCGCGCCGACGTGCGCGACCAGGCGCAGGacgtgctcgcgctcgccgCGCGTCCGGGCGCCGCGAAGCCGGTGGAGTCTGAGGAcaagcggcggcgcgcggcggagcgcgaggggcggcggcgcgcgcgccggctgcggcgcgaggcggcggccgcggcggcggggggcgcgccgcccgcgcaccgcGACGGCGACTCCAGCGACGACGACCTGCCGCCCAACGACCACCAGATGTTCGCCACCGAGATCGCATCGGTGCGCGCGGAGGCGCAAGCGCTGTTCGCGGACGCGCTGCCCGCgtggcgcggcgtgcgcggcgtgtGCGCGCGGCTGGCCCGCTGGCGGCGCCGCGAGCCCGCGCTATACACCGACGCCTACATCGCCGACTGCCTGCCGCAGCTGCTCGCGCCCTACGTCCGCCACGAGCCCGCGCTATACACCGACGCCTACATCGCCGACTGCCTGCCGCAGCTGCTCGCGCCCTACGTCCGCCACGAGCCCGCGCTATACACCGACGCCTACATCGCCGACTGCCTGCCGCAGCTGCTCGCGCCCTACGTCCGCCACGAGGTACCCTTGCCCACGCGTGGGCACATTGTTCGCGGACGCGCTGCCCGCgtggcgcggcgtgcgcggcgtgtGCGCGCGGCTGGCCCGCTGGCGGCGCCGCGAGCCCGCGCTATACACCGACGCCTACATCGCCGACTGCCTGCCGCAGCTGCTCGCGCCCTACGTCCGCCACGAGGTACCCTTGCCCACGCGTGGGCACATTGTTCGCGGACGCGCTGCCCGCgtggcgcggcgtgcgcggcgtgtGCGCGCGGCTGGCCCGCTGGCGGCGCCGCGAGCCCGCGCTATACACCGACGCCTACATCGCCGACTGCCTGCCGCAGCTGCTCGCGCCCTACGTCCGCCACGAGGTACCCTTGCCCACGCGTGGGCACATTGTTCGCGGACGCGCTGCCCGCgtggcgcggcgtgcgcggcgtgtGCGCGCGGCTGGCCCGCTGGCGGCGCCGCGAGCCCGCGCTCTACACCGACGCGTACATCGCCGACTGCCTGCCGCAGCTGCTCGCGCCCTACGTCCGCCACGAGCTAATCCTTTGGAACCCGCTGGCGGACGAAGACAATGAGGATTACGAGAAAATGGACTGGTACAAATGCCTCATGATGTACGGAACCAAGACGGAGCAGTTGTCGAGCGATTCGGAGCAATCCTCGGACGAGGAGGAGGCCCCGGCCGTGACCGAGGCCTCTGTCCGCGAGGACCCGGACCTCATGCTGGTGCCGACCATCGTGGACAAGGTGGTGCTGCCTAAGCTTACTGAACTAGTGGAGCAGGCGTGGGACCCGATGTGCGTGCGCGCGTGCGTGCGCCTGCGCCGGCTGCTCGTGCGCGCCGCCGAGCTGCCCGCCGCCTCGCGTCTGCCGCGCCtggccgccgccgtgcgcgcgcgcctcgccgccgcgctcAACGCCGACGTCTTCCTGCCCGCGCTCCCGCCGCACATAATGGAGGGCGCCGGCGGCGCGTTCTGGCGGCGCTGCCtgggcggcggcgtgcggctgctgcgcgccgcgctcgcgctgtgcgcgccgccgccggcgctgCACGCGGACCCGCTGGTGCTCTCGCTTATCGAAACGCTGagctgcgcggcgggcgcggcgccgggcgtgcaggcggcggcggcggcggcggcgctggcggccaCGCTGCCGCGCGCGggcgagctgcgcgcggcggccctcgcgcggctggcgcggctggcgcagctcgcgctcgacCGCCTGCACTCCGCCAACCCGCTGCACTTAAAAGCATTGGAGCAGGCGAGAGGCGTCATCGCAGAGGCGCGCGCGGCAGCAGAGTGa
- Protein Sequence
- MSLFRKPKKIQRRMFCADDDEDGDPEPPPPPMISHNKKENKPLKSTALLSFADEEEDGEVFKVKKSSQSKRLSKRRDKEKKRVPDSESNKLDSNGYEETQPSPEKTKVEDGKRKKKITLDGLILSGREALAADGAGDVTDGEGEEEDDRGFHQYRPESVRAALAVAPGHIPDAALIHAARKTRQQARELGDFVPVQSEAPPGSRLVRDDDGDDDDEEEGRIQVRGLELPSDKPQRGTAAAALDEELDSEAEQWEEQQLQKAMPAIGDVTVLSEVAMDMNPFAVAPPPPRMEDGPPHLRALNAPGHAPPASAHELLEALHHRLEELQMSRSSMAAKKEELSSRLLAAARVRESRAARCAGLDAAYKRAQAARGYVTDLVECLDEKMAQLEALEARVLGVHRKRCALLVERRRADVRDQAQDVLALAARPGAAKPVESEDKRRRAAEREGRRRARRLRREAAAAAAGGAPPAHRDGDSSDDDLPPNDHQMFATEIASVRAEAQALFADALPAWRGVRGVCARLARWRRREPALYTDAYIADCLPQLLAPYVRHEPALYTDAYIADCLPQLLAPYVRHEPALYTDAYIADCLPQLLAPYVRHEVPLPTRGHIVRGRAARVARRARRVRAAGPLAAPRARAIHRRLHRRLPAAAARALRPPRGTLAHAWAHCSRTRCPRGAACAACARGWPAGGAASPRYTPTPTSPTACRSCSRPTSATRYPCPRVGTLFADALPAWRGVRGVCARLARWRRREPALYTDAYIADCLPQLLAPYVRHELILWNPLADEDNEDYEKMDWYKCLMMYGTKTEQLSSDSEQSSDEEEAPAVTEASVREDPDLMLVPTIVDKVVLPKLTELVEQAWDPMCVRACVRLRRLLVRAAELPAASRLPRLAAAVRARLAAALNADVFLPALPPHIMEGAGGAFWRRCLGGGVRLLRAALALCAPPPALHADPLVLSLIETLSCAAGAAPGVQAAAAAAALAATLPRAGELRAAALARLARLAQLALDRLHSANPLHLKALEQARGVIAEARAAAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -