Csas002513.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- MBD-R2
- Assembly
- GCA_014607495.2
- Location
- CP053177.1:5701514-5718482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00031 0.024 15.7 1.1 1 23 355 377 355 377 0.98 2 11 0.051 4 8.7 0.3 2 23 385 407 385 407 0.91 3 11 0.12 9.6 7.5 0.5 1 23 411 433 411 433 0.97 4 11 5.1e-05 0.004 18.1 1.7 1 23 438 461 438 461 0.98 5 11 0.025 1.9 9.7 0.8 1 23 465 488 465 488 0.97 6 11 0.14 11 7.3 0.1 3 21 502 520 501 525 0.89 7 11 0.19 15 6.9 0.1 2 23 565 587 564 587 0.95 8 11 0.0067 0.52 11.5 0.2 2 19 602 619 601 623 0.93 9 11 0.00016 0.012 16.6 0.4 1 23 629 651 629 651 0.98 10 11 0.00011 0.0089 17.1 2.0 1 23 658 680 658 680 0.96 11 11 1.1e-05 0.00089 20.2 3.0 1 23 686 709 686 709 0.97
Sequence Information
- Coding Sequence
- ATGCGATGCTCAGTTGCCGATTGTGATAATGAAACGGATCATACTAAGTATCCAGGAATAACATTTCATGAGTTCCCACTAGACCCTGTGCTGAGGAAAGAGTGGCTGCATGCATTGGGCAAGGAGTTACTGTTCACGGACGATCTGGGGATCATTTGTTCCGAACACTTCTTGAGGGATGATCTGTATTATACCAAGGAAGATGGCTGGAGAGTGCGTCCTGGGGCCGTGCCTCTTGATACCTCAAACACCTTTGTTGAACAGCAGGGCATCAAAATTTGCCGAATATGCCTCGTAGGAAACATCAAAATCATTCCAATAACTAAATACAAACTGGAAATGGCTTATGAGGAAGTAACTGGCATAAGTTTAGTGGGTGATGGTCTACCAAAGGACCTGTGTATAGAGTGTGCACAACGCTTACTCAACTGCAGTAAGTTCCGGAACAAAAGTCTACGAGCGTATCTTATGTTGATGCAAATATCTGGGACCAATGAACCGTTAACACAAGAAAGCATAAACTCTCTGAATCGATATGAAAACCATCTGACAACATGTCTACAAAAAAAGATATTCGAACCTGATCATTTTGATCTAGTAGTTAAATATAAACCGTCAACTATACCCATAGAGAAAATTGAAGTTAAAGTAGAAGAATACCAAGAACCCAGTATCAAAGATGAAGAGAGTAAAAAGGAGGTGTTTATCGATGAATCAGATAAAAAAGACTTCATCAATGAATCTGACGATAATGCTGATGATGGTGGTGATGATGATGTAGACGATGACAATTTCGCAGACTATCTAAATTGCGAAATGGAACAAGAGTCAGACGAAGAACCAATCATAAAAGTGAAGAAGAAAAGAGACGTTAAAGAGAAACAAGTCAGAACGAGACAAACAACAAGAAAAAAGATTAATAAAACGAAAACTAAAAAGGTAGCCAAGAAAAAGGGTATTGAAGATGACCTGTCAATTTTTACAGTGACAGAATTGACAAAAGAAGAACAATTGGCAGATATACAAAAGAGACAAGACAGTGCTAATTATAAAAATGCTATATTTAAGTGCACAATGTGTTATAAAGGTTTCATCAATGAAATTGCCTATGAGAAGCATATGACCAGACATACTGACGTGTGCGGTAAAAACGAATGTCCGGTGTGTAAGATACGATACAAGAACCTACGTCTTGTGAGACAACATCTGACTGCCTTCCACACGCAGAGATTTAGCTGTAACGAATGCTCATATGTCGGTATGAACAGACAAAACGCTCGACTTCATCAAAAATGGCACAAGGGGACCGAATACAAATGTCCTCATTGTGGAGAGGTGTTCAATAAATTCACATCATACATGGGCCACATACGTATAAAGCATCCGTCTGACTTTGTTTGTGAACTTTGCGGGTTTTCATACGTCAGCGAAAAGGGGAAGAAACTACATAAGAGGATGACGCATAGACTGGAAAACACAAAGATCCCACCGGACGCTCCATACTGTGAACCGTGCGACGTTAGATTTATATCTGAAGAGGCTTTACAAAGACATCTCAGCGTATCACCGAGACATAACGCTAATAAAGAAAAGAAGGCGCCCAATCACGGCAAGTTCATAAAGAAACCGGATCAGACGATCAAACGGGAAAACGTCGTGAAGAAGATGCGAGGGTACACCGGTCCACCTATACCTTGTGAACAGTGTGGCGTGGAGCTAGAAGACTTAAAGGAGTACACGGTACATTTCCGTAAACAACACGCAGATAAGAACAGAACGTTCTTCCCGTGCAAGCGACCGGTCATGTGTGACGTGTGCGGGAAACTATTCCAGTCTCAGGTGCATCTAAAAGACCACGCGTGGGTCCACACAGACGAGAAGCCCTTCAAATGCGATCTCTGCGGGAAAGCGTTCCGAATGAAGGCCCGTCTGCTCATACACAGCAAAATACATGACGCTGAGAAGAAAACCTTTCCGTGCCAGCAGTGCGGGAAACATTTCTCTACATACGCTAATCGGCAGAAGCATTTAGTTATTCATACAGGGATAAGATCATACGAGTGCGAAATGTGCGGGAAATGCTTCAAGCATGCCAGCGATAAACGAGCACACATCAACTATGTGCATCTCAAGAAACCGTGGCCGAAACGTACGAGAGGGAAAAGGACAGACACATTGATGGAGCATTCAGTGCCAAATCTGAACATGGAAGTAGATGAAGACAAGGATATGCACAATCAGTATCGCAGAGCGTTTCTAAACTAG
- Protein Sequence
- MRCSVADCDNETDHTKYPGITFHEFPLDPVLRKEWLHALGKELLFTDDLGIICSEHFLRDDLYYTKEDGWRVRPGAVPLDTSNTFVEQQGIKICRICLVGNIKIIPITKYKLEMAYEEVTGISLVGDGLPKDLCIECAQRLLNCSKFRNKSLRAYLMLMQISGTNEPLTQESINSLNRYENHLTTCLQKKIFEPDHFDLVVKYKPSTIPIEKIEVKVEEYQEPSIKDEESKKEVFIDESDKKDFINESDDNADDGGDDDVDDDNFADYLNCEMEQESDEEPIIKVKKKRDVKEKQVRTRQTTRKKINKTKTKKVAKKKGIEDDLSIFTVTELTKEEQLADIQKRQDSANYKNAIFKCTMCYKGFINEIAYEKHMTRHTDVCGKNECPVCKIRYKNLRLVRQHLTAFHTQRFSCNECSYVGMNRQNARLHQKWHKGTEYKCPHCGEVFNKFTSYMGHIRIKHPSDFVCELCGFSYVSEKGKKLHKRMTHRLENTKIPPDAPYCEPCDVRFISEEALQRHLSVSPRHNANKEKKAPNHGKFIKKPDQTIKRENVVKKMRGYTGPPIPCEQCGVELEDLKEYTVHFRKQHADKNRTFFPCKRPVMCDVCGKLFQSQVHLKDHAWVHTDEKPFKCDLCGKAFRMKARLLIHSKIHDAEKKTFPCQQCGKHFSTYANRQKHLVIHTGIRSYECEMCGKCFKHASDKRAHINYVHLKKPWPKRTRGKRTDTLMEHSVPNLNMEVDEDKDMHNQYRRAFLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276508;
- 90% Identity
- iTF_00276763;
- 80% Identity
- iTF_00276508;