Csas000605.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_014607495.2
- Location
- CP053152.1:14282519-14290456[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-70 2.5e-65 221.4 14.3 1 296 26 316 26 320 0.83 2 2 1 2.8e+04 -6.0 13.2 170 237 330 393 288 395 0.46
Sequence Information
- Coding Sequence
- ATGATACCATTTCGCACACCGGCCAATGTAGCAGAGGAAAACTACAATAAAAGCTACATCAAAACTAGGAACACAGCGGAGCAGCGCCTAGCGGCGCGGCGGGCGGCGCGGGCGGAGGCGCGCGACATACGCATGCGCGAGCTTGAGCGGCAGCAGCGCGAGCAGGAGAACCATGCCGACAAGGCCTACGACATGTACTCAGGTCCACGGTTGTCGTCACCGGCGGAGACGGCGTTGCGGCGCGGCGGCGCGCGGCTGGCGGCGCTCGGGGCGACGCATTCCCCTCGGCGCGGCTCCGAGGACGCGGACGACGCGCTCGGAGGCAAGGACCTGCGGCACGAGCTGAAGGAGGTGGAGGAGAAGTGCCGCAAGGCGATGATCCTGCAGGCGCAGCTCGACAACGAGAAGGCGGCGCTCGGCTACCAGCTCGAGCTTATGAAGGACCGCCTGGAGGAGGCGCTGCAGGAGTACGCGCAGCTGCAGCGCGAACACAAAGAGAAGTGCTCAGCGCACGAGCGGTTAAAGCGCGAGCACGCGTCGCTCGAGCGCGAGCTGGCGGGCGCGCGGGCCGGGCTGGGCGCGCGGGACGCGGCGGCGCGGGACGCGGGCTTCGTGTTCGTGGACGCGCAGCCCGCCCCGCCGCGGGACGCCGCCCCCGCTCCCGCCGGCCCCGCACCCGGCCCGCTGCTGGCGCTCGTGTCGCTGCAGGGTGAGCAGCTGCTCAACGAGGCGGGGGAGGGCACGCTGGACGTGCGGCTGGCGGCGCTGGCGTCGTCCCGGTCGGCGCTGGAGGCGGAGGTTCGGCGCTTGAAGCTGCAGCTGCACGACGAGCGCGCCGCCAGACACAACGGTCTGGGCGCCGAGCGAGACGCCGAGAGCGAGGCCGAGTTGGAGACGCTGCGCAAGGCGCTGACGGAGGCGAAGGCGCGCGCGGCGAGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCCGGCATGGCGCGGCTGCAGGCGCAGGCCGACCGACTGCGTGCGCGCCACGGCGCCTGCGAGGACAGCGAGGAGCAGCTCAAGGCGGAGCGCCGCCGCCTGCAGCGAGAGGCGCGCGAAGCACTAAACCGAGTAGAAGAGCTAGAGACAGAGAACAGCCACCTCACGAAACGTCTAGACAAACTGAAGAACGCCAAGTCTGCCCTGCTAAAGGAACTGTGA
- Protein Sequence
- MIPFRTPANVAEENYNKSYIKTRNTAEQRLAARRAARAEARDIRMRELERQQREQENHADKAYDMYSGPRLSSPAETALRRGGARLAALGATHSPRRGSEDADDALGGKDLRHELKEVEEKCRKAMILQAQLDNEKAALGYQLELMKDRLEEALQEYAQLQREHKEKCSAHERLKREHASLERELAGARAGLGARDAAARDAGFVFVDAQPAPPRDAAPAPAGPAPGPLLALVSLQGEQLLNEAGEGTLDVRLAALASSRSALEAEVRRLKLQLHDERAARHNGLGAERDAESEAELETLRKALTEAKARAARAEAEAALQAAGMARLQAQADRLRARHGACEDSEEQLKAERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -