Csas017593.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053150.1:6450074-6451992[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-08 1e-05 25.8 0.0 4 43 20 59 17 61 0.90
Sequence Information
- Coding Sequence
- ATGCCACGCACTTCTACTATGTCACCTGGACGTAAAAGAAGAACGTGGGATCCAGTACAAATGGAGAAAGCAGTGGACGCTGTTAGGAAGAAATTGATGGGATTTAAAATGGCAGCAAAAACTTTTGCTGTCCCTAGAACCACTTTAAGAAGACTGGCTAAAGATACCATGTCAACCGAATCAGTGGTCCGAAAGCCCTTAGGTAGACGAACTATACTTTCCCCTTTCATTGAAAAAAAACTGGTTGAGTATCTATTGTTCATGGAGGCTAAATATTATGGTCTGACACGGATGGACGTTCGTCGACTGGCTTTTCAGCTGGCATCGAGAAACGAAATTTCGCACCCATTCAGGAATGAGGTAGCAGGACGAGCGTGGTTAGACCACTTTCTCAGAAGGCATAAAGATGAGTTGTCACTTAGAAGCCCAACAGGCACATCCTATGCTCGTGCTCAAGGTTTCAACCGCGAAGCAGTCAAGATGTTCTTTGACATTCTACAAGCTGAGTTTGAAAAGAAACGATATGCTCCTGATCGTATCTACAATGTAGATGAAACTGGGCTAACAATCGTGCAAACTAAAATTCCTCAGGTTATTGGTAAAAAAGGCAAAAGACAGGTAGGAGCTCTTACCGCGGCAGAACGGGGATCTCTTGTGACATTAGTTTGTTGTATGAGTGCATCTGGAAACTACATTCCACCGATGATGATATTCCCACAAAAGAATTTCACTGACACCCTCATGAAAGGTGCTCCACCTGGAGCTATAGGAAAAGTCCATCCTTCTGGTTGGATACAAGGAAACTTATTCACGGAGTGGTTCAAACATTTTATTGAGAAGACTAATCCATCGGAAGAATCTCCTGTTATGCTCATACTTGATGGCCATTATAGTCACACACGAAACCTGGATGTGCTGACTCTTGCTCGGGAAAACCACGTCACGATCGTAAGTCTACCACCACATACAACGCACAAGCTTCAGCCTCTTGACAGGACGTTCATGGGTGCACTTAAATCTCATTACAGTGAGGAAATTCGCAAATTCATGCTGCACTCTGACAGAATGATTAAGCCTTATGACATAGCTGAACTGTTTGGCCGCGCGTATATGAAGAGCACAAGTGGTGAACTTGCATGCAATGGTTTCAGGTCTGAAACCAGACCATCAAGGGAATTGACAAGTGAAGGTGAACCCTCAACATCCAGAAGTCAATCAGCTACAGATGAGCAACGTGCAACCGCAATGCCTGTTGACCAGCCAAATCTGACTACTTCAGAACCCTCAACTTCAAACCATGACCTCATTATGCCTGAGAATATTTTACCCATTCCTGGAGCCAAGAGAAGGACATCTAATCGAGGAAGAAAGTCAACATCAGCTGCAGTGATCACTTCTTCACCTTATAAAACTCTTTTAGAAGACTCCTTGAAACGGTCGGCAGCTCGTGGTCGCGGCCAAGGACAAAGACGTGGTCGTGGATGTCGTCGGGGTGGTATTCAGGATGCAGATATTCAACAAAGGGCTAGTCGCAAACGTCGAACACAGAGGAATGTTACATCGTCGGAGAGTAGTAGTTCTGAAAGTGATGAGAACTTCACCCAAAATGAATCTGGCGACAGTGATGATGACACTGAGCAAGGGAATGGAAGACCAGCCGAAAACATTGATGCCAATTGCATCTTTTGTGATGCTCGTTATTCAAACGACAAACGGGGAGAAACGTGGATTCAATGCCAGGCATGTGGGCTCTGGGCTCATCAGGATTGTGCCGGTCCTGAAGGGGAATACTACATATGTGATTTCTGTCGTTAA
- Protein Sequence
- MPRTSTMSPGRKRRTWDPVQMEKAVDAVRKKLMGFKMAAKTFAVPRTTLRRLAKDTMSTESVVRKPLGRRTILSPFIEKKLVEYLLFMEAKYYGLTRMDVRRLAFQLASRNEISHPFRNEVAGRAWLDHFLRRHKDELSLRSPTGTSYARAQGFNREAVKMFFDILQAEFEKKRYAPDRIYNVDETGLTIVQTKIPQVIGKKGKRQVGALTAAERGSLVTLVCCMSASGNYIPPMMIFPQKNFTDTLMKGAPPGAIGKVHPSGWIQGNLFTEWFKHFIEKTNPSEESPVMLILDGHYSHTRNLDVLTLARENHVTIVSLPPHTTHKLQPLDRTFMGALKSHYSEEIRKFMLHSDRMIKPYDIAELFGRAYMKSTSGELACNGFRSETRPSRELTSEGEPSTSRSQSATDEQRATAMPVDQPNLTTSEPSTSNHDLIMPENILPIPGAKRRTSNRGRKSTSAAVITSSPYKTLLEDSLKRSAARGRGQGQRRGRGCRRGGIQDADIQQRASRKRRTQRNVTSSESSSSESDENFTQNESGDSDDDTEQGNGRPAENIDANCIFCDARYSNDKRGETWIQCQACGLWAHQDCAGPEGEYYICDFCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276305; iTF_00161471;
- 90% Identity
- -
- 80% Identity
- -