Csas021539.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- -
- Assembly
- GCA_014607495.2
- Location
- CP053175.1:3877659-3878888[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-09 2.1e-07 31.2 0.0 1 37 8 45 8 50 0.93
Sequence Information
- Coding Sequence
- ATGCCGAAGATACCCCAATATACGAAAGAGGCTCTTGATGAAGCTTTAGAAAAAGTGAACACAAAAACTATGTCTTTGAGAGCAGTAGCTAAAAAATATAATATACCTAGAGGTACCTTACAGTTTAAACTAAAAAATCCTTCTTCAAAATCCCAATTTGGACCAACACCGTATTTAACATATGAAGAAGAAAATACTATCGGAGAGTGGTTGATTAAAATGGCCCGTAAAGGCTTTCCTAGAAGGTCAGATGATGTTCTCGACACAGTTCAAAAATTTTTAACTGATAATCCACGCGATACCCCTTTTGTCAATAATCGGCCTGGTCCGGGATGGCTAAAAGCTTTTTTAAAACGTCACCCTACCTTAGTTAAAAGAACAAGCGAGGGAGTAACTAAAGCCAGTGCCTGCGTGTCTGAAGCGGATATAAAGAAATGGTTTCTTGAAATAAGAAACTATTTGACATGTGAAAATCTGTCAAACGCAATTCAGGATCCAAAGCGTGTGTTTAATGCTGACGAGACAGGATTTCAGCTCTGTCCTTCTACAGGCCGCGTACTTGCCGCTAAAGGAGACAAAAATGTTTATTCTGTAGAGCTAGGAAACTCCAAAGAAAATGTTACGGTACTATTTACCTTTTCCGCTGACGGCAAAACCTGTCCTCCTTTAATTGTCTTTCCTTACAAACGACTGCCTGAAAAAATTGCAAAATCAGTACCACCTAAATGGGGTATCGGACGCAGTGATTCGGGGTGGATGACGGCAGATGTTTTCAACCAGTTTATCACTGAAATATTTGATCCATACCTTACTGATAGTAACATCAAAAGACCAGTCATTCTATTTATAGATGGCCACAAGAGCCATATCACTTTGCAGCTTAGTTTGACTTGTAAAGAGTTAGGAATTGAACTAGTTGCTCTGTACCCCAACACAACCCGCATCACTCAGCCAGCAGATGTTTCAGTTTTTGGGCCCATTAAAAGAAGATACCGAAACGCTGTTCGAAAATTTCAATCAGAAAACATTGGAGAGGTGGTAACAAAATTAAACATCGCTACTATCCTAAAAACTGTTATTGATGAGTTGAAACCAGAAACTATTATAAACGGTTTCCGAGCATGCGGTTTGTGTCCCTTTGATGAGAATGCTTTAGATTACTCCAAATGTTTAAGTACAAAAAAAAAATATAGAAGATATACAGTTATGACAACAAGCTTATGTCCCTGA
- Protein Sequence
- MPKIPQYTKEALDEALEKVNTKTMSLRAVAKKYNIPRGTLQFKLKNPSSKSQFGPTPYLTYEEENTIGEWLIKMARKGFPRRSDDVLDTVQKFLTDNPRDTPFVNNRPGPGWLKAFLKRHPTLVKRTSEGVTKASACVSEADIKKWFLEIRNYLTCENLSNAIQDPKRVFNADETGFQLCPSTGRVLAAKGDKNVYSVELGNSKENVTVLFTFSADGKTCPPLIVFPYKRLPEKIAKSVPPKWGIGRSDSGWMTADVFNQFITEIFDPYLTDSNIKRPVILFIDGHKSHITLQLSLTCKELGIELVALYPNTTRITQPADVSVFGPIKRRYRNAVRKFQSENIGEVVTKLNIATILKTVIDELKPETIINGFRACGLCPFDENALDYSKCLSTKKKYRRYTVMTTSLCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822883;
- 90% Identity
- iTF_00822883; iTF_00822884; iTF_00822949;
- 80% Identity
- -