Csas008114.1
Basic Information
- Insect
- Carposina sasakii
- Gene Symbol
- retn
- Assembly
- GCA_014607495.2
- Location
- CP053162.1:8027585-8033437[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-21 1.5e-17 64.4 0.0 12 89 22 97 10 97 0.90 2 2 6 1.5e+04 -3.0 0.0 25 38 224 237 185 238 0.62
Sequence Information
- Coding Sequence
- ATGATGGCAGCTCCAATAACTGCGCTTTCAAACAAATTGTTTTGCAATGACTTTGCAACGATCAATCACAAATTTCAAGGTACTCCAATAAACAGATTGCCAATCATGGCCAAGTCAGTTCTAGACCTGTACGAACTATACAACCTGGTGATAGCTCGAGGGGGCCTCGTGGAGGTCATCAACAAGAAGCTCTGGCAGGAGATCATCAAGGGCCTTCGACTACCCTCCTCCATCACCTCGGCTGCTTTTACATTAAGGACACAATACATGAAATACCTGTACGACTATGAGTGCGAGAAGAAGAACCTGTCGACACGCAGCGAGCTGGATGCAGCCATCGAAGGCAACAAGCGCGAAGGTCGACGCGCCTCTGGACAGTACGATGCACAGGCTGCGCTGGCTATGCCGGGTCTGCACCGCGTGCCGGCGTCGCTTGCGCAGCTGTCACAGCACATGCCGCCGCTGTCGCTGTCGTTGGGCGGAGTGCCGCGCCTGCCGCCGCTGCCGCACGCGCCACACCTGTCCCAGCACGACATCGAGTACAAAGTTCGCGAGTACATGAAGATGATTCAGCAGCAGAGAGAGCTGATGAGGAATGGTTCAGAATCTCCCCCCGGCTCCAACGGCCCCGCCCCTATGATGTCTCCGCGTGACGCTGCAGCACTCAGCGCTATTGATGTCTCTCGTCTCACGCTGTGGTCCTTGTACAATAATAACAACAACAGCCCACAGCCTGACATCGAACCACAACGCGAGGCGTTAAACTTAAGCGAGAGCCCGACTAGCGTCAGCGTGAAACGTGAGGCGTGCCGCTCCCCCCCACCGCCGGCCAAGCGCCGCACGCCTCGCCCCCCTTCCCCGGAGCGCTCCCCCGCGCCCTCCCCTGTGAGACCCAGCAGTCTGCCGCACGCGCAGCTGAATGGCAATACTGGTGTCAATGGGGCAGCTTTCAAGATTACCACAAGAGGTGACGCCAGCACCGGCGACCAGCAGCTTGTAGTCTCCATAGAACTAAACGGAGTGACATACGAAGGAGTCCTGTTCCCCTCACAAAACGGAAACGGCCAAAATGGCCACAGGCAGATGGTGTCTTAA
- Protein Sequence
- MMAAPITALSNKLFCNDFATINHKFQGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPGLHRVPASLAQLSQHMPPLSLSLGGVPRLPPLPHAPHLSQHDIEYKVREYMKMIQQQRELMRNGSESPPGSNGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDIEPQREALNLSESPTSVSVKREACRSPPPPAKRRTPRPPSPERSPAPSPVRPSSLPHAQLNGNTGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- -
- 80% Identity
- -