Cfug030435.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579671.1:8728516-8734540[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.58 2.1e+04 -3.3 0.1 10 25 217 232 215 233 0.83 2 19 5.3e-05 1.9 9.6 0.0 20 46 289 315 281 321 0.86 3 19 0.0034 1.2e+02 3.9 0.0 21 45 318 342 314 345 0.88 4 19 2.5e-05 0.89 10.7 0.0 21 47 346 372 342 379 0.86 5 19 0.0025 90 4.3 0.1 21 46 374 399 370 405 0.86 6 19 0.0046 1.7e+02 3.4 0.0 21 46 402 427 398 433 0.83 7 19 0.019 6.9e+02 1.4 0.0 21 45 430 454 426 461 0.73 8 19 0.018 6.6e+02 1.5 0.0 21 45 458 482 453 489 0.73 9 19 0.019 6.9e+02 1.5 0.0 21 45 486 510 482 517 0.73 10 19 0.018 6.4e+02 1.6 0.0 21 45 514 538 508 545 0.74 11 19 0.0041 1.5e+02 3.6 0.0 21 46 542 567 537 574 0.83 12 19 0.022 7.9e+02 1.3 0.0 21 45 570 594 566 601 0.81 13 19 0.0004 14 6.8 0.2 21 49 598 626 594 629 0.86 14 19 0.00048 17 6.6 0.3 21 49 626 654 623 657 0.87 15 19 0.0056 2e+02 3.2 0.0 21 46 654 679 652 685 0.84 16 19 0.033 1.2e+03 0.7 0.0 21 44 682 705 678 709 0.81 17 19 0.00038 14 6.9 0.2 21 49 710 738 705 741 0.86 18 19 0.00049 18 6.6 0.3 21 49 738 766 735 769 0.87 19 19 0.00041 15 6.8 0.0 21 52 766 797 763 799 0.94
Sequence Information
- Coding Sequence
- ATGATGCAAATTCGAGACGAATGGAAACTGATCGTTTTCTACAATTTAGAACCTTATTGGCAAGCAACAAGCGCCTTTGAGAAGTATACACAAACATTGAGAGAAACCTGCGAAAAGATAAGGGATCAAGCCCAATGTGACGTCATCGTATTACAACTACGCCACGGATTCTCGGAATTAGAGTACTATAATCATATGTTACTCAATCAGCATGAGAGCACGCGAGCTGCCAGACTGCGTCGCCGCCGCCGAGGCCTTATCAACGGCATAGGCTACGTAGCAAACAGCCTGTTCGGTGTACTCGATGAAAGATTCGCCGAACAATATCAAAAGGATATTGCTTTAATTCGAGACAATGAAAAACATATAGCAAGACTATGGAAAAATCAAACATCTATTATGGAAGCAGAATATAATCTATTAAAACGAGCCGAAAACACTCTTAATCAACAGTACAAGATGATAAATCAGCATATGAACACTTTGggcaatgcaataaataaactacATGATGAAGTGGAAAACATCAAGATTGTTGATTCGTTCAATTTAGGAGCAACAATAGCAAGCAACATGTTGAGCAATATAAAGGAAATAAAGAGTTCGTCAGCTAATAAGCCGGAACTGAAGAACATTGATGCTACGAAACCAACTGCCGAGAAGCCGAATGTTGATACATCAGAGGAACTACCAGCAGTCGAGGAGACCTTGAAGAATCATAAATCAGTCGAAGAATCAGTTACTGAACCAGCGAGCGTAACTACCGAGTTACCAAATCCTTCTATGACGAATTGCGCTACTAAATGGAAACCCCCTCAgaaaaaactaaagaaaattGTCACTCTAGAAGCTAAGGATggcaaaaaaaGAGAGAAGCCGTTTGCTTGTGATATATGTAACAAGTGGTTTACTCAGaaggaaaatttaaataagcatCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTAATGGGAAGTTTATCCAGAAGAGCTATTTAAATAAGCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAAAGGTTTAATCAAAGCGGTGATTTAAATAGGCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAGAGGTTTACTCAGAAGGTACATTTAAATAAGCATCTCAGAACACACACGGGAGAGAAGCCATATGCTTGTGATATATGTAATGGGAAGTTTATCCAGAAGAGCGATTTAAATATTCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTAATGGGAAGTTTATCAAGAAGAGCGATTTAAATATTCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTAATGGGAAGTTTATCAAGAAGAGCGATTTAAATATTCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTAATGGGAAGTTTATCAAGAAGAGCGATTTAAATATTCATCTCAGAACACACACAGGAGAGAAGCCGTATGCTTGTGATATATGTAATGGGAAGTTTATCAAGAAGAGCGATTTAAATATTCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTAATGGGAAGTTTATCCAGAAGAGCGATTTAAATATTCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAGAGGTTTACTCTGAAGggaaatttaaatattcatctCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAAAGGTTTAATCAAAGCTGTCATTTAAATTATCATCTCAGAATACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAAAGGTTTAATCAAAGCTGTCATTTAAATTATCATCTCAGAATACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTAATGGGAAGTTTATCCAGAAGAGCGATTTAAATATTCATCTCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAGAGGTTTACTCTGAAGggaaatttaaatattcatctCAGAACACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAAAGGTTTAATCAAAGCTGTCATTTAAATTATCATCTCAGAATACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAAAGGTTTAATCAAAGCTGTCATTTAAATTATCATCTCAGAATACACACGGGAGAGAAGCCGTATGCTTGTGATATATGTGACAAGAGGTTTACTCTGAAGGAAAATTTAAATACTCATCTCAGAACACACTCGGTCGCTAAGCCTGATGCAAAAGCGCCAGTGCGATAG
- Protein Sequence
- MMQIRDEWKLIVFYNLEPYWQATSAFEKYTQTLRETCEKIRDQAQCDVIVLQLRHGFSELEYYNHMLLNQHESTRAARLRRRRRGLINGIGYVANSLFGVLDERFAEQYQKDIALIRDNEKHIARLWKNQTSIMEAEYNLLKRAENTLNQQYKMINQHMNTLGNAINKLHDEVENIKIVDSFNLGATIASNMLSNIKEIKSSSANKPELKNIDATKPTAEKPNVDTSEELPAVEETLKNHKSVEESVTEPASVTTELPNPSMTNCATKWKPPQKKLKKIVTLEAKDGKKREKPFACDICNKWFTQKENLNKHLRTHTGEKPYACDICNGKFIQKSYLNKHLRTHTGEKPYACDICDKRFNQSGDLNRHLRTHTGEKPYACDICDKRFTQKVHLNKHLRTHTGEKPYACDICNGKFIQKSDLNIHLRTHTGEKPYACDICNGKFIKKSDLNIHLRTHTGEKPYACDICNGKFIKKSDLNIHLRTHTGEKPYACDICNGKFIKKSDLNIHLRTHTGEKPYACDICNGKFIKKSDLNIHLRTHTGEKPYACDICNGKFIQKSDLNIHLRTHTGEKPYACDICDKRFTLKGNLNIHLRTHTGEKPYACDICDKRFNQSCHLNYHLRIHTGEKPYACDICDKRFNQSCHLNYHLRIHTGEKPYACDICNGKFIQKSDLNIHLRTHTGEKPYACDICDKRFTLKGNLNIHLRTHTGEKPYACDICDKRFNQSCHLNYHLRIHTGEKPYACDICDKRFNQSCHLNYHLRIHTGEKPYACDICDKRFTLKENLNTHLRTHSVAKPDAKAPVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00275550;
- 90% Identity
- iTF_00275550;
- 80% Identity
- iTF_00275550;