Cfug031440.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- -
- Assembly
- GCA_951230895.1
- Location
- OX579673.1:1007201-1009444[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.019 75 4.0 0.0 12 28 172 188 163 200 0.86 2 9 0.37 1.5e+03 -0.1 0.0 12 28 221 237 215 247 0.83 3 9 0.013 52 4.5 0.1 13 28 270 285 265 296 0.82 4 9 0.021 84 3.9 0.0 12 28 318 334 310 347 0.83 5 9 0.015 59 4.4 0.0 12 29 366 383 355 393 0.84 6 9 0.041 1.7e+02 2.9 0.0 14 28 416 430 411 442 0.83 7 9 0.019 78 4.0 0.0 12 28 462 478 452 502 0.82 8 9 0.44 1.8e+03 -0.4 0.0 12 29 509 526 505 534 0.85 9 9 2.1 8.6e+03 -2.6 0.0 8 20 622 634 618 638 0.83
Sequence Information
- Coding Sequence
- atggttttaattaaatatgtgcGAACTGATATAAAAATAACCCCGACAATTTTAGACGCTCACCACATTGGTAAAAATGAAGCAGCTCACCATTACTCTATAAATGGAGACCAGTCTTATAAACAAGGTAATAAATATATTGAAGATGACCTAGATCTTGGATCACACGATGAAAAACAAAGCGAAGACATAGCGTCTATTCCTGATAAAGAAATAACTACAGCTGAGCTAAGAGAAGAGAGCGATTTCGACGCTCACACTCTTGACTCGTGGGAGAAACGGGAATTCTTTGAAAAAGGCTATATTAATCATAACGAAAATTATCCAAATGCCTATTTAAATATCGAAGTAAGCAAAGATGATAGTAGATCTCCGACTTTCAATGATGAAAAGTCTACAGCTGAACTAAGTGACGATGATATAGACGAAGGAGTAGCTAGATCTTCTATTGCTGATAAAGAAGTAACTTTAGCTGAGATGGCCAGGACAGATGATGATTCTGGAGCTCACACTCTTGATTCTTGGGAAAAACGAGAGTACTTCAAGAAATTTGGTGGAAAATTTTATGATCAAGGCGTAGGTAGATCTTCTATTTTTGATAAAGAAGTATCTTTAGCTAAGATAGCCAagacagatgatgatgattcaggaGCTCACACTCTTGAGTCTTGGGAAAAACGAGAGTACTTCAAGAAATTTGATGACAAATATGATCAAGGCGTAGGTAGATCTTCTATTTTTGATACAAAAGTATCTTCAGCTGAGATAGCCAAGACAGATAATGATGATTCAGGAGCTCACACGATTGAGTCTTGGAAAAAACGAGAGTACTTCAAGAAATTTGGAGACAAATTTTATGATCAAGGCGTAggtaaatcttctatttttgATACAGAAGTATCTTCAGCTGAGATAGCCAagacagatgatgatgattcaggaGCTCACACTCTTGAGTCTTGGGAAAAACGAGAGTACTTCAAGAAATTTGGTGACAAATATGATGAAGGCGTAGGTAGAACTTCTATTTTTGATACAGAAGTAACTTCAGCTGAGATAACCAagacagatgatgatgattcaggaGCTCACACTCTTGAGTCTTGGGAAAAACGAGAGTACTTCAAGAAATTTGGTGACAAATATGATCAAGGCGTAGGTAGAACTTCTATTTTTGATACAGAAGTAACTTCAGCTGAGATAGCCAagacagatgatgatgattcaggaGCTCACACTATTGAGTCTTGGGAAAAACGAGAGTACTTCAAGAAATTTGGTGACAAATATGATGAAGGCGTAGGTAGAACTTCTATTTTTGATACAGAAGTAACTTCAGCTGAGATAGCCAagacagatgatgatgattcaggaGCTCACACTCTTGATTCTTGGGAAAAACGAGAGTACCTCAAAAAATTTGGTGGCAAATATGATGAAGGCGTAGGTAGATCTTCTATTTTTGATAAAGAAGTATTTTCAGCTGAGATAGCCAAGACAGATGTTGATGCAGGAGCTCACACTCTTGAGTCTTGGGAAATACGAGAGTACTTCAAGAAATTTGGTGACAAATTTTACGATCAAGACTTTAAACACAAAAATGACCCATATGATGATTCAGATACTGAGAAAAACGAAGAGGAAGTTAGATCTACTTCCTATAAAGAAAGACCTACAGCTGACTCTTGGGAAAAAAGAACTGATCGCCATTACCGTGACAAGAGATTCCTGAACAATAATGGAGCTAATTTAAGATACACAAACGAAGTTAGACCTTCTATACATGTTAAAGAACCTAAAAGAAGAACACCAAACTACGGAACAACAGAAAAATCAACAGTAGAACTGACATCCGACGATTTGCAAACCATCGCACCTGACGATTGGGAGAAGAGAACTCGTGACGACGACGATGACACGAAACTAAACTTGGAGAAATACAAAAGTGCAGACGAAGATAAAAATAACGAGATAGAACGCAAGATACATTTTGAAAAAGAAGCCCATGCAAATGCTAGCATTTCTGATGTTAACAAAAAAGAGGAAAGAGAACCAAAGCAACACGAAATAAGCAGAATACGAGGAGTGTCATTTGACTATGTTGATCCATCGGGCAAAATGGTGCCGCAGGTGGTTTACGAATTAATACACAGGCCAAAACCTCGCGACAAGGGAATACCTCATGCTAAACTTAGGAAAGTTAAAGTAATACCGCGAGTTAAATCTGGAAACGAAATGAGTTAG
- Protein Sequence
- MVLIKYVRTDIKITPTILDAHHIGKNEAAHHYSINGDQSYKQGNKYIEDDLDLGSHDEKQSEDIASIPDKEITTAELREESDFDAHTLDSWEKREFFEKGYINHNENYPNAYLNIEVSKDDSRSPTFNDEKSTAELSDDDIDEGVARSSIADKEVTLAEMARTDDDSGAHTLDSWEKREYFKKFGGKFYDQGVGRSSIFDKEVSLAKIAKTDDDDSGAHTLESWEKREYFKKFDDKYDQGVGRSSIFDTKVSSAEIAKTDNDDSGAHTIESWKKREYFKKFGDKFYDQGVGKSSIFDTEVSSAEIAKTDDDDSGAHTLESWEKREYFKKFGDKYDEGVGRTSIFDTEVTSAEITKTDDDDSGAHTLESWEKREYFKKFGDKYDQGVGRTSIFDTEVTSAEIAKTDDDDSGAHTIESWEKREYFKKFGDKYDEGVGRTSIFDTEVTSAEIAKTDDDDSGAHTLDSWEKREYLKKFGGKYDEGVGRSSIFDKEVFSAEIAKTDVDAGAHTLESWEIREYFKKFGDKFYDQDFKHKNDPYDDSDTEKNEEEVRSTSYKERPTADSWEKRTDRHYRDKRFLNNNGANLRYTNEVRPSIHVKEPKRRTPNYGTTEKSTVELTSDDLQTIAPDDWEKRTRDDDDDTKLNLEKYKSADEDKNNEIERKIHFEKEAHANASISDVNKKEEREPKQHEISRIRGVSFDYVDPSGKMVPQVVYELIHRPKPRDKGIPHAKLRKVKVIPRVKSGNEMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -