Cfug009417.1
Basic Information
- Insect
- Carpatolechia fugitivella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951230895.1
- Location
- OX579650.1:16151208-16175246[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-81 7.1e-77 259.6 21.5 1 297 125 417 125 420 0.87 2 2 1 3.6e+04 -5.9 12.1 121 170 433 482 424 494 0.55
Sequence Information
- Coding Sequence
- ATGGGTAGGCCAGGGGAAGAGGAGTTCGATACTCCTGACCAAAGTGATGAAGAGAGTGGGGAAGCCTTCACTGATGGAGACTTCGGGGATACAGACGATGATCTCATAGATTGTCCCACAGGAGACACCTCCAACATCCCCATCAATGAGActgctaatatgaacgttagtAAAATAGAAACAAATGGTGTTAACGATAATGTTTTTGATGATGACCAACCGAAGGTCAATGGACTGAAAAACGGACATGCAAGTGATTTAAGTGATTCTGGGAACCAAAGTAACAGTGAAACTATGCCGGAAATCAGGAGAGACTCGCACGGGGACAACAATCCATCGATTGTTGGCATTCTCGGTGGACAACATAATCAAGCTGAGCAGCGGCTAGCGGCTCGTCGAGCGGCTCGGGCGGAGGCTCGCGAGATCCGCATGAGGGAGCTGGAGCGGCAGCAGAGGGAACAGGAGGACCATGCGGATAAAGCTTACGACATGTACTCAGACCCACTGGCGGGTCGGCGCGGCGTCAGTAGGCTGGCCTCGCTCACCGGGACCCCTGTAGGGCTCCACTCGCCGCGACGCAGCTCCGAAGACTCCGCCGATGATGGCTTCAGCATCAAGGACCTCAGGcaCGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCACAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAATATGCGCAGTTACAGCGAGAGCACAAAGAAAAATGCTCAGCGCACGAACGCTTAAAACGCGAACACGCATCGTTAGAACGCGAATTAACGTGCGCGCGCGATGCCGTGCGAGCtcgcgacgccgccgccgcgcacgCGGGGTACGCCTTCGTGGACGCCGGCACCGTGGAGAAGAACGGGGAGATGGAGAACGGAGAAGACGCGCCAGGGTTCGGCGCGGTCCCGGCTTTAGCGCTCGTCAGCCATCAGTCGGAGCAGTTGCTGCAAGATGCTGGCGAAGGGACTCTAGACGTGCGATTGCAGAAGCTGCTATCCTCGAAGCAGGGTCTGGAGTCCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAACGAGCGGCCAGGCAGAACGGGGTCAGCCACCACCACGACCTGGATATACAAAGCGAGATGGAATCCCTCCGCAAATCAGTCTCTGAAGCGAAGGggcgcgcggcgcgggcggAGGCCGAGGCAGCTCTGCAGGGCGCGGCAGTGGCGCGGCTGGAGGCCCAGCTGACAAGGCTCAGGGCTCGCCAGGAGTACCAGGACGAGCACGAGGAACAACTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCTCGCGAAGCCCTCAACCGAGTTGAAGAACTGGAGACGGAGAACAGCCACCTCACCAAACGCCTCGACAAACTCAAGAACGCCAAGTCGGCGCTACTCAAAGACCTGTGA
- Protein Sequence
- MGRPGEEEFDTPDQSDEESGEAFTDGDFGDTDDDLIDCPTGDTSNIPINETANMNVSKIETNGVNDNVFDDDQPKVNGLKNGHASDLSDSGNQSNSETMPEIRRDSHGDNNPSIVGILGGQHNQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSDPLAGRRGVSRLASLTGTPVGLHSPRRSSEDSADDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELTCARDAVRARDAAAAHAGYAFVDAGTVEKNGEMENGEDAPGFGAVPALALVSHQSEQLLQDAGEGTLDVRLQKLLSSKQGLESEVRKLKLQLNEERAARQNGVSHHHDLDIQSEMESLRKSVSEAKGRAARAEAEAALQGAAVARLEAQLTRLRARQEYQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -