Ckad011274.2
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381701.1:4089943-4094218[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.062 3.6 8.3 0.0 3 23 2 23 1 23 0.95 2 15 5.2 3e+02 2.2 0.1 3 21 51 69 51 72 0.81 3 15 0.0074 0.43 11.2 0.5 2 23 95 116 94 116 0.94 4 15 1.8e-06 0.0001 22.6 1.0 1 23 120 143 120 143 0.93 5 15 0.15 8.9 7.0 0.1 3 20 149 166 148 168 0.87 6 15 0.045 2.6 8.7 0.2 2 23 241 263 240 263 0.94 7 15 1.3 73 4.2 1.1 3 23 289 310 287 310 0.94 8 15 0.34 19 6.0 0.8 3 23 334 354 332 354 0.95 9 15 1e-05 0.00058 20.2 0.4 1 23 358 381 358 381 0.96 10 15 0.18 10 6.8 2.0 3 21 388 406 387 407 0.94 11 15 4.7 2.7e+02 2.4 6.3 3 23 416 437 414 437 0.90 12 15 0.0059 0.34 11.5 4.5 1 23 444 467 444 467 0.96 13 15 0.0066 0.38 11.3 2.1 1 23 472 494 472 494 0.96 14 15 6e-06 0.00035 20.9 0.4 1 20 500 519 500 522 0.94 15 15 1.5e-05 0.00085 19.7 3.1 1 23 528 551 528 551 0.97
Sequence Information
- Coding Sequence
- ATGTGCGTATACTGCGGCGACGCCTTCGAGGATCCGGAGGTGTACAGGGAACATATGAAACAACAACACTACCAGCCCAACGTCAGGCATGCGTTTGCGCATACCATGGGAACTGAGGAGTTCCTCAAAGTTGATTGCACAGATTTGGGATGCAAACTCTGCGCTAAAAAGTTTGACTCCCTACTTTCCATAGCGGAACATCTTGTTTTGGAACACGACAAAAATTTCAATCTTAGCGCAGATATCGGATTGCAGTTATTCAAGTTAGGGCCAGAAAGATGGGTGTGCGCCACCTGCTTCCAGAAATTTCCGTCGCTCAGGAACTTGTCCCGTCATACAAGCGGTCATTACCACAAGTACACTTGCGAAACTTGCGGAAAGTCGTATATTAGTCGTGATAATTTGAGGAAGCACGTCCTCTTTAGTCATTCCGAGGAAAAGATATGTACAAAGTGTAGAAAGTCCTTCCCTAATATCCGAGAGCGCCGCGAACATGTGTTAGCTAATAAACGATGCTGGCCTTACTGTTGTACTAATTGTGGCCAAAGAAAGAATCATCAACACCTCAACAGAAGGAACATTGAAGAACAGTTGAATGACTGGGCATTTCTTTTTGTTCTAGAGAAGCGAAATGACCCGAATTTCATCTCGAAACGGAACGCCGAGATAATAGTGAAATATTCAACCGTATACCCGTTCAAGCTGCCAGAAGAGAACATGGTTTGTGTATACTGTTGCGAGACCTACCCAGACCCTGCAGAATTTAGGACCCACATGAACGAGGAACATGAAACTTTTAATCCCAAAATGGCCTTTGTCCATTGTTCCGAAGGGTATATAAAAGTTGACTGCACTCATATTAATTGCAGACTCTGCTTCAAACACTATCAGACTCTGGATCTAATCGCAAACCACCTTTACACCGAACATAAGAAGCCCCTAGATCTAACTGTCGCATTAGGTTTACAACCATTTAAATTAGAAGACAATAAGCTATTTTGCGCGATGTGTCGCTATAAAGCTATAAGCTTACGACAACTCAGCAGACATACACAAAGCCATTTCTGGAGATACACATGTGAGGCCTGCGGCAAATCCTATGCGACGAACACGGCGCTGCGCAGTCATATAAGATTCTCGCATATTGGCACCGAAAAGATATGCCGCAAATGCAAGTGCACTTTCAGTTCTATAGAAGAGAAGCGGAAACATATGCTGGAGTCCCAAAGGTGCTGGTCGCATTTATGCTGCGTTTGCGGTGAGAGGTTCATGTCCTGGCATGCCAAACAACTCCACTTATCCGAATGCCACGGTGTCGAGAAGAAAGTCTATGTGTGCCCCGAATGTGGGCACGTTTTCCATGAAAGAAAAAAATATAGGACACACTTCAGGCTGTCGCACACTGATGACAATTACGTCTGTTCTTGTTGTGGTATGAAGTTTGTTACCAAGAAGACTTTGGAAGAACACAGAGTATCACACACGATGGAGAAGCTGTTCCCTTGTACAgtttgctccaagtcgtttcctaggaagaagaatttggcacagcacatgtggatacacatggagcataagcgctttgaatgtaaactgtgtaacaaaaagtttaatcagaaagtcagctggaaaacacacatgaaatcgtaccaTCCAGAATTAGAAGATTTTGAAGGCAAAAATAATAATTTGAAACTAATGTTTTCCGTGTTAACCGAGTAA
- Protein Sequence
- MCVYCGDAFEDPEVYREHMKQQHYQPNVRHAFAHTMGTEEFLKVDCTDLGCKLCAKKFDSLLSIAEHLVLEHDKNFNLSADIGLQLFKLGPERWVCATCFQKFPSLRNLSRHTSGHYHKYTCETCGKSYISRDNLRKHVLFSHSEEKICTKCRKSFPNIRERREHVLANKRCWPYCCTNCGQRKNHQHLNRRNIEEQLNDWAFLFVLEKRNDPNFISKRNAEIIVKYSTVYPFKLPEENMVCVYCCETYPDPAEFRTHMNEEHETFNPKMAFVHCSEGYIKVDCTHINCRLCFKHYQTLDLIANHLYTEHKKPLDLTVALGLQPFKLEDNKLFCAMCRYKAISLRQLSRHTQSHFWRYTCEACGKSYATNTALRSHIRFSHIGTEKICRKCKCTFSSIEEKRKHMLESQRCWSHLCCVCGERFMSWHAKQLHLSECHGVEKKVYVCPECGHVFHERKKYRTHFRLSHTDDNYVCSCCGMKFVTKKTLEEHRVSHTMEKLFPCTVCSKSFPRKKNLAQHMWIHMEHKRFECKLCNKKFNQKVSWKTHMKSYHPELEDFEGKNNNLKLMFSVLTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00111913;
- 90% Identity
- -
- 80% Identity
- -