Basic Information

Insect: Caradrina kadenii
Gene Symbol: -
Assembly: GCA_947462355.1
Location: OX381700.1:1668039-1673674[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.5 29 5.4 2.9 1 23 392 414 392 414 0.95

2 9 2.1e-06 0.00012 22.3 0.9 1 23 461 484 461 484 0.97

3 9 0.00011 0.0066 16.9 0.3 2 23 490 511 490 511 0.97

4 9 2.8e-05 0.0016 18.8 3.5 1 23 519 541 519 541 0.97

5 9 4.4e-06 0.00025 21.4 1.3 1 23 546 568 546 568 0.96

6 9 2.6e-06 0.00015 22.1 1.4 1 23 577 599 577 599 0.99

7 9 1e-06 5.9e-05 23.3 0.5 1 23 605 628 605 628 0.97

8 9 0.056 3.2 8.4 0.9 1 14 634 647 634 657 0.79

9 9 4.3 2.5e+02 2.5 4.3 1 23 665 688 665 688 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.5	29	5.4	2.9	1	23	392	414	392	414	0.95
2	9	2.1e-06	0.00012	22.3	0.9	1	23	461	484	461	484	0.97
3	9	0.00011	0.0066	16.9	0.3	2	23	490	511	490	511	0.97
4	9	2.8e-05	0.0016	18.8	3.5	1	23	519	541	519	541	0.97
5	9	4.4e-06	0.00025	21.4	1.3	1	23	546	568	546	568	0.96
6	9	2.6e-06	0.00015	22.1	1.4	1	23	577	599	577	599	0.99
7	9	1e-06	5.9e-05	23.3	0.5	1	23	605	628	605	628	0.97
8	9	0.056	3.2	8.4	0.9	1	14	634	647	634	657	0.79
9	9	4.3	2.5e+02	2.5	4.3	1	23	665	688	665	688	0.94

Sequence Information

Coding Sequence: ATGTTGCACAATACAGGGCATTATGGCCCGAATGAGACGCCAATAAATATGGGCGCGCCCGTTAATATGACACCAATAAGTGGCCACATGAATATGGCTCATAATATTAATAATCTGAGCAAAATAGCCCACCAAGGCGTCCCCGCGCCTAGTGGGCACTACAACCTGCCGGAATATGGACATTACAACCAGTCTCCAATAGGGATGTCGCCGCAAATGGGTCAGTTTCCCAACTATCAACAACTAGGCTTTCAACATTCGTACATGAATCAAAATCCTACAAATATGAACGATTTACCATTCTCTAACGGTATGTTTCCTATGAATTTGAATATGCAGAACGAGCACAACGCTAATATGATGAGTTATGCTTATGATAAGAGAATAATAGAGTCGGTGAGACAAGAGAACTTTAAAGAACAGAACTTGCTTAAAATGCCATTGACAATACCTCAGATACCAAATAGGTCGTACAACAAACACATTGGTGTCAACAATGACTATATACATAACAATTTGTATGAAGAAACTGAAGATAATCTAGATTTAAGCATGAAAACTCAAGATAAATTACAAATCAACAACACGCGGCGAAAAAACATCGAAAATACAGTCAAATTAATTGAAAATATTCTAATTCACTCTTCAAACAAGCCTAAAGAAGTACCAGCAATTATTCCGATCGCATCAAAGAGTACTAAAACTGATGTACCATCGGATATGACATTAGAAAAAGCAACTAAAACATCAAGAATGCTTCAAAAACCAACGTCAAAAGTCACAGTCTCAAATACAGATCCCTTAGAGCACTCACCCGCAGATTTGACAATAGAAGATTCAACTAACGACAGTGATATGCCGATACCTGCAGTCAAAGTTGGCGACTTCAGACGTAACTCAGACAACGTATTGTCTTCAGAAGATGATGACGTAAAACCCGTTGGAATAACTCAGCACTTTATAACGGAAGATGCGGAAGTGACTACGGACAATAGTATTGTAATAAAGGTTGAGAAAGCAAGCTGGGCGGATTCGGATTGCTATACTCCATTCTTGAAGGATTATCACGGATTTCATAGGGATGAACACATGAATTTCAGAATTATTGAGGGTGACTGTAGTGTTGCTGAAGCCGTTATTGCTTATAAAAATGAAATCAAACCAGAAGGAGTATTTGAATGTCCACATTGCGCCCTTCTCTTCAAACACCCAAAAAGATTTCTTATACACAATAAATGGCATACATTTGGCCTAACAAACATTAAAAGAATGGAGATCGCAAAGGTCAGAGAGCAAAAGAGATTTGAACGGAAAGAGGCAAAGATTATAGAGCGAATGAATTCCAAAGATGTGACGGATATTAAGGTGGACGGGAAGGTCTTTCCGTGTAAGGATTGTGATAAGGTATTCAGTGCTAAAGGGAGCTTGAAGAATCATAGACAAAGAACACATCCCACACGCATTCGGGAATGTAAAATCTGCCACAAAGTGATATCAAGCTGGATGGCTCTCCGAGCCCACCTGGCAACTCACACAGCGGACTCAGGGCTGGGCTTCCAGTGTAGCGAATGTCCTAAGAGGTTCAAGTACTCCCACTCACTGGCGAAGCACTCTGACACTCACTTGGAAAAGACCCACGCTTGCACCGAATGCCCTAAGAAGTTTGGTTCGCAAGCTCTCCTGAAGATGCATATGAAGACTCATGAGCGGATGCAGCGCGGAGCGACTTATAGATGTACTTACTGCGGGAAAGGATTCTTTGAGTCTTATAGTTTACAGGTACATGAACGAACACATCGTAATGAAAGACCTTACGCGTGTGACATTTGTAACACCAGCTTCGGAACTAACTCCAGCCTCAAGCGGCATTTGAAAGTGTCCCACAGCACAGCGAAGCCACATCAGTGTACCATATGCAAGCGTAACTTCTCAACGGAGTCTATAAGAGACAGACATGAGCTGAGGGTCCATGGGGACCCAGAAGACTTCAAGTTTCCATGTAAACAGTGTTCTTGCAAATATTTGAAACTGAAAGATCTACAGAAACACGTTTACAAAATGCATCCCAAAGGTAAAAGGAAGAAAAAGGCGAAAGTCAGCGAGTCTGAATAG
Protein Sequence: MLHNTGHYGPNETPINMGAPVNMTPISGHMNMAHNINNLSKIAHQGVPAPSGHYNLPEYGHYNQSPIGMSPQMGQFPNYQQLGFQHSYMNQNPTNMNDLPFSNGMFPMNLNMQNEHNANMMSYAYDKRIIESVRQENFKEQNLLKMPLTIPQIPNRSYNKHIGVNNDYIHNNLYEETEDNLDLSMKTQDKLQINNTRRKNIENTVKLIENILIHSSNKPKEVPAIIPIASKSTKTDVPSDMTLEKATKTSRMLQKPTSKVTVSNTDPLEHSPADLTIEDSTNDSDMPIPAVKVGDFRRNSDNVLSSEDDDVKPVGITQHFITEDAEVTTDNSIVIKVEKASWADSDCYTPFLKDYHGFHRDEHMNFRIIEGDCSVAEAVIAYKNEIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRMEIAKVREQKRFERKEAKIIERMNSKDVTDIKVDGKVFPCKDCDKVFSAKGSLKNHRQRTHPTRIRECKICHKVISSWMALRAHLATHTADSGLGFQCSECPKRFKYSHSLAKHSDTHLEKTHACTECPKKFGSQALLKMHMKTHERMQRGATYRCTYCGKGFFESYSLQVHERTHRNERPYACDICNTSFGTNSSLKRHLKVSHSTAKPHQCTICKRNFSTESIRDRHELRVHGDPEDFKFPCKQCSCKYLKLKDLQKHVYKMHPKGKRKKKAKVSESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00071769;
90% Identity: iTF_00273873;
80% Identity: -