Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: -
Assembly: GCA_932526535.1
Location: OW052116.1:1841398-1846455[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.52 33 5.4 2.9 1 23 393 415 393 415 0.95

2 9 2.2e-06 0.00014 22.3 0.9 1 23 462 485 462 485 0.97

3 9 0.00012 0.0075 16.9 0.3 2 23 491 512 491 512 0.97

4 9 2.9e-05 0.0019 18.8 3.5 1 23 520 542 520 542 0.97

5 9 7.9e-06 0.00051 20.6 0.3 3 23 549 569 548 569 0.99

6 9 2.6e-06 0.00017 22.1 1.4 1 23 578 600 578 600 0.99

7 9 1e-06 6.7e-05 23.3 0.5 1 23 606 629 606 629 0.97

8 9 0.057 3.7 8.4 0.9 1 14 635 648 635 658 0.79

9 9 4.4 2.8e+02 2.5 4.3 1 23 666 689 666 689 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.52	33	5.4	2.9	1	23	393	415	393	415	0.95
2	9	2.2e-06	0.00014	22.3	0.9	1	23	462	485	462	485	0.97
3	9	0.00012	0.0075	16.9	0.3	2	23	491	512	491	512	0.97
4	9	2.9e-05	0.0019	18.8	3.5	1	23	520	542	520	542	0.97
5	9	7.9e-06	0.00051	20.6	0.3	3	23	549	569	548	569	0.99
6	9	2.6e-06	0.00017	22.1	1.4	1	23	578	600	578	600	0.99
7	9	1e-06	6.7e-05	23.3	0.5	1	23	606	629	606	629	0.97
8	9	0.057	3.7	8.4	0.9	1	14	635	648	635	658	0.79
9	9	4.4	2.8e+02	2.5	4.3	1	23	666	689	666	689	0.94

Sequence Information

Coding Sequence: ATGTTGCACAACACAGGGCCTTATGGTCCGAACGAGACGCCAATAAACATGGGCGCGCCCGTTAATATGACACCAATAAGTGGCCACATGAATATGGCTCATAACATTAATAATCTGAGCAAAATAGCCCACCAAGGCGTCCCCGCGCCTAGTGGACACTACAATCTGCCGGAATATGCACATTACAACCAGTCGCCTATAGGTATGTCGCCGCAAATGGGTCAGTTTCCCAACTATCAACAACTGGGCTTTCAACATTCGTATATGAATCAAAATGCTACGAATATGAATGATTTACCATTCTCTAACGGTATGTTTCCTATGAATTTGAATATGCAGAACGAGCACAACGCTAATATGATGAATTATGCTTACGATAAGAGAATAATAGAGTCAGTAAGACAGGAGAATTTTAAAGAACAGAACTTGCTAAAAATGCCTTTGACTATACCACAGATACCAAATAGATCGTACAATAAACACATTGGTGTCAACGACGACTATGTACATAACAATTTGTATGAAGACACTCAAGATAATCTAGATTTAAGCATGAAAACTCAAGAGAAACTACAAATCAACAACACAAGGCGAAAAAACATCGAAAACACGGTTAAATTAATTGAAAATATTCTAATTCACTCTTCAAATAAACCTAGAGAAGTACCAGCAATTATTCCGATTGCATCAAAGAGTACTAGAACGGATGTACCATCAGATATGACGGTAGAAAAAGCAACGAAAACATCAAAAACGGTTCAGAAACCAACACCAAAAGTCACAGTTACGAATACGAATACAGATCCATTAGAGCAATCGCCCGCAGACTTGACAATAGAAGACTCGACTAACGACAGTGATATACCATTACCTGCGGTCAAAGTCGGTAGCGTCAATCGTAAATCAGACAATGTAGGGTCAGAGGATGATGATATAAAACCTGTAGGGATAACGCAGCACTTTATAACGGAAGATGCAGAAGTGACTACGGACAATAGTATCGTGATAAAGGTTGAGAAAGCGAGCTGGGCAGATTCGGACTGCTATACTCCGTTCTTGAAGGACTATCACGGGTTTCATAGGGACGAACATATGAATTTCAGAATTATCGAGGGTGACTGCAGTGTTGCCGAAGCTGTTATTGCTTATAAAAATGAAATCAAACCAGAAGGTGTATTCGAATGTCCACACTGTGCCCTTCTCTTTAAACACCCAAAAAGGTTTCTAATACACAATAAATGGCATACATTCGGTCTAACAAACATTAAAAGAATGGAAATCGCGAAGGTCAGAGAGCAAAGGAGGTTTGAACGCAAAGAGGCAAAGATTATAGAGCGAATGAATTCCAAAGATGTGACGGATATTAAGGTGGACGGGAAGGTGTTTCCGTGTAAGGATTGTGATAAAGTGTTCAGTGCTAAAGGGAGCTTGAAGAATCATAGACAGAGAACACATCCCACACGCATTCGGGAATGTAAAATCTGTCACAAAGTGATATCGAGCTGGATGGCTCTCCGGGCTCATCTGGCGACGCACACAGCGGACTCGGGGCTCGGCTTCCAGTGCAGCGAGTGTCCTAAGAGGTTCAAGTACTCCCACTCACTGGCGAAGCACTCTGACACTCACTTGGAAAAGACACACGGTTGCACCGAATGCCCTAAGATGTTCGGTTCGCAAGCTCTCCTGAAGATGCATATGAAAACTCACGAGCGGATGCAGCGCGGCGCTACTTACAGATGTACTTACTGCGGGAAAGGATTCTTTGAGTCTTATAGTTTACAGGTACATGAGAGAACGCATCGTAATGAGAGACCTTACGCGTGTGACATCTGTAACACCAGCTTCGGAACTAACTCCAGTCTCAAGCGGCATTTGAAAGTGTCCCACAGCACTGCGAAGCCCCATCAGTGTACCATATGCAAGCGCAACTTCTCCACGGAGTCTATCAGAGACAGGCATGAGCTGAGGGTCCATGGGGATCCAGAGGACTTCAAGTTTCCGTGTAAACAGTGTTCTTGCAAATATTTGAAACTAAAAGATCTGCAGAAACACGTTTACAAAATGCATCCCAAAGGTAAAAGGAAGAAAAAGGTTAAAACGAGCGATTCTGAATAG
Protein Sequence: MLHNTGPYGPNETPINMGAPVNMTPISGHMNMAHNINNLSKIAHQGVPAPSGHYNLPEYAHYNQSPIGMSPQMGQFPNYQQLGFQHSYMNQNATNMNDLPFSNGMFPMNLNMQNEHNANMMNYAYDKRIIESVRQENFKEQNLLKMPLTIPQIPNRSYNKHIGVNDDYVHNNLYEDTQDNLDLSMKTQEKLQINNTRRKNIENTVKLIENILIHSSNKPREVPAIIPIASKSTRTDVPSDMTVEKATKTSKTVQKPTPKVTVTNTNTDPLEQSPADLTIEDSTNDSDIPLPAVKVGSVNRKSDNVGSEDDDIKPVGITQHFITEDAEVTTDNSIVIKVEKASWADSDCYTPFLKDYHGFHRDEHMNFRIIEGDCSVAEAVIAYKNEIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRMEIAKVREQRRFERKEAKIIERMNSKDVTDIKVDGKVFPCKDCDKVFSAKGSLKNHRQRTHPTRIRECKICHKVISSWMALRAHLATHTADSGLGFQCSECPKRFKYSHSLAKHSDTHLEKTHGCTECPKMFGSQALLKMHMKTHERMQRGATYRCTYCGKGFFESYSLQVHERTHRNERPYACDICNTSFGTNSSLKRHLKVSHSTAKPHQCTICKRNFSTESIRDRHELRVHGDPEDFKFPCKQCSCKYLKLKDLQKHVYKMHPKGKRKKKVKTSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00071769;
90% Identity: iTF_00274673;
80% Identity: -