Ckad004030.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Caradrina kadenii
Gene Symbol
-
Assembly
GCA_947462355.1
Location
OX381699.1:2006176-2027241[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.083 4.8 7.9 0.7 2 21 59 78 59 79 0.94
2 16 0.021 1.2 9.7 3.8 2 23 142 163 141 163 0.95
3 16 0.46 27 5.6 0.7 1 23 175 199 175 199 0.91
4 16 7.8e-05 0.0045 17.4 0.3 2 23 206 229 205 229 0.97
5 16 0.086 5 7.8 0.3 1 23 235 257 235 257 0.93
6 16 0.002 0.12 13.0 2.9 1 23 263 285 263 285 0.98
7 16 0.32 18 6.1 0.5 2 20 296 314 296 316 0.90
8 16 0.02 1.2 9.8 0.4 1 23 395 417 395 417 0.97
9 16 1.2 71 4.2 7.2 1 23 424 446 424 446 0.95
10 16 0.00083 0.048 14.2 1.8 1 23 490 513 490 513 0.95
11 16 0.00014 0.008 16.6 0.7 1 23 520 543 520 543 0.98
12 16 0.0023 0.13 12.8 0.2 2 23 565 587 564 587 0.96
13 16 0.00067 0.039 14.5 2.6 3 23 613 634 612 634 0.95
14 16 0.00018 0.01 16.3 1.2 1 23 659 681 659 681 0.96
15 16 7.3e-05 0.0042 17.5 0.1 1 23 687 709 687 709 0.97
16 16 0.00023 0.013 15.9 0.7 3 23 717 738 715 738 0.95

Sequence Information

Coding Sequence
ATGGAGCAACCTATCATAAAAACGGAGGTAAAGCAAGAATGCCTGGACAGCAGTGAGGATGAGATCTGGATTGTGCAGACCGCTGATGCTGAAGCCACACAGGAGCTGCAGAAATTACTCTGTAGTACCAAGGCTAATGAAGACAGGCCGGATGGCGGATCAGATAAGGCACCAAAATGTCTTAATTGCAGTCAAATATTCGCGAACGCGGATGCTCTGTCGAGCCATCGCTGTAGAAGACGCAACCCTAAGCGGAAGTCCAAAGATCTGGTGAACCTGATATGTATACCTACTGAGGAAGACTTCTTAAAAAGAGCTCAAGGACGCCCGCGACCCGCTGACACAACAATAGACAATGATCTTCTGGTAATGCGTCCCAGGAAACGCCGCAACCGGGAACCGACCTCCAACCCCCAAATAGTGACCTGCCACAACTGTAACGAATCCTTTACATCTAAAGTTAGGCTTAAGTTTCATATGCAGTTCCACGAAACGTCGAACTTGGCGCGGTCAGACGGTCGCTACTCCTGCTCGGAGTGCGACGACGCCACCTTCGCCACGGAGACGGAGCTGTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGTCCTGTCGAGGGGTGTGGGAAGACATTTTTTCTCAGGGCAACCCTAACAAAACACAGTCGCACGCACACAGACACGCGACGATACGTGTGCGTGACGTGTGATAAACGATTCTTAGATAAGCAGACGCTGGATGAACATGGAGTGACGCATTTACAGATCAAGCCCTTCCAATGCCACATCTGCCTGAAGCAGTTGACGCGTCGCTCGCGCCTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTCGCGCCGCGCCTCGTGCGCGTCTGTGCTGTCTGCACGAGGGCCTTCAGAGACCATCGACATGCACAGGAACACGCGTCCAAATCGACGGAGTGTATCGAAGCGTTCGCGAACGAGCTGAAGGAGGAAGCTGAGGAGGTGTCCGTACAGTTGTCGCCCACCAGCGGCCTCGTGAGGCATACTGTGCAGATTGTAGAATCCCCGAAGCTATCGAAGCCTATCAAGCGGCAGGTGTCGAGTGAAATAGGTGAACCGCTGCTGACCCAGCTGGCGGACGAGGCGCGGGCGCTCATACGAGTCGTCGAGATCGAGAAGGCGTTCAGATGCGAGTATTGCGAAGACGTGTTCTACTTGGAGAGTGGTCTGAACAACCACCGCACCATACACAAGGGGGTGAAGAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTTGCTACCTACTCCAGATGTACAACACATAAAACGACCCACGGCTTCTACAAGCGCTCGCTAGCCGATGCTAAGAAACATGCCGACGCGCCCTCACAAGCCGACGCCGACGCCGCCGCGCCCTCCGCTACCGGGATACTGGGATACGGCGACTTTCCTGTGGTCAAACACTTTTTGTGCGAGGACTGCGGCCGCTCCTACCTGCACTGGACCTACCTACAAGTACACAGGCGTATGAAGCACGCCAACGATAACTTTCTTTACAAATGCAACCAGTGTGAACTTACTTTTCCCAACAGCTGGAGTCTGGCATATCACCGTAAGAAGGTGCACGGCAAGTCCGGAGCTGATGAGCCCGGAGCCACCAACAATAGCAACAGGGAGGACTATAGGATACCATGTCGAGATTGTGATGAGGTGTTACCCAACAAAACAGCCTTATACAAGCATCGTAAGAAAGAGCACAGCGATGTCACGACGCGAGCCTATTCTAAACCAGGCATGTACGCAAGTGCAGAGTCGGAGTCCACAGGTGGTGCGTGTGCGCATTGTCACGCCACGTTCACGCACGCGGAGGACTTACAGAAACACGTCAAAGAAGTCCACGGCAAAGATGAGGCGTCATGCTTATCTTGCAACAAGACTTCGGGCTCGGAGACGGCGTGTCCGCGCAGGCCCCACGCCTGTCCGGTCTGCGGACATGCCTTCCGGACGCTGTCCATGAGGAACGAGCACCTGAGGGTGCACACGGGGGAGAGACCCTTCCCCTGTGACGTCTGCGGAGTAGCGTTTAGGAGGTCTACGGCCATGCGGAACCACCGTCTCATTCACACAGGCGTGCGGGCGTGGGCGTGCGGGCGCTGCCCCAAGCGCTTCCGCATCCGTTCTGACCTGCGCACGCACCTGCGGCTCAAGCATCCCGCCACCATTGTTGTAGTTGAGATGTTAGGTCTAAACCCGACACCCGACGAAGTGTTAAATGTGCTCGCGTCACAGAACGTTCCACACGACAAGCTCATCGAAATCACGAAAATGTCATTCACTAAGGGCTCGACGAGTGTGATACCGACATGCGCACGCGCGCTCTCGGCTCTGAACAACGTGCCGCGCACACATGTCGCGTGCATCAAGCCTACACCCTCCAGCATGTTAGACGACTTCCAGCCAGCCCGTCGTGGCCGAGGGATCGCAAAGAACCCGCGCCGCCCCAAGATACTACAGCGAGGAGACTCGGAGCCGCCCGATGATAATACTTACCCTAGTGGAGAGGAGCTCTCAGACCTGAACATGCAACTCTTGCTGCGGGACGGCGTGCTGGTAAACGGCAGTGAAATGGTACAGCTGCAGCTGGACGACAATATACTGATGGAATAG
Protein Sequence
MEQPIIKTEVKQECLDSSEDEIWIVQTADAEATQELQKLLCSTKANEDRPDGGSDKAPKCLNCSQIFANADALSSHRCRRRNPKRKSKDLVNLICIPTEEDFLKRAQGRPRPADTTIDNDLLVMRPRKRRNREPTSNPQIVTCHNCNESFTSKVRLKFHMQFHETSNLARSDGRYSCSECDDATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHRHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSSEIGEPLLTQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNNHRTIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKHADAPSQADADAAAPSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDNFLYKCNQCELTFPNSWSLAYHRKKVHGKSGADEPGATNNSNREDYRIPCRDCDEVLPNKTALYKHRKKEHSDVTTRAYSKPGMYASAESESTGGACAHCHATFTHAEDLQKHVKEVHGKDEASCLSCNKTSGSETACPRRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMLGLNPTPDEVLNVLASQNVPHDKLIEITKMSFTKGSTSVIPTCARALSALNNVPRTHVACIKPTPSSMLDDFQPARRGRGIAKNPRRPKILQRGDSEPPDDNTYPSGEELSDLNMQLLLRDGVLVNGSEMVQLQLDDNILME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00831499;
90% Identity
iTF_01440355;
80% Identity
-