Ckad016994.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381702.1:1108458-1110794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.8e-06 0.00022 21.5 4.2 1 23 8 31 8 31 0.95 2 21 0.0017 0.099 13.2 0.7 2 23 37 59 36 59 0.94 3 21 2.8e-05 0.0016 18.8 0.3 2 23 68 90 68 90 0.97 4 21 9.3e-06 0.00054 20.3 2.3 2 23 99 121 98 121 0.95 5 21 1.4e-05 0.00082 19.7 2.5 2 23 129 151 129 151 0.96 6 21 4.6e-06 0.00026 21.3 2.4 2 23 160 182 159 182 0.96 7 21 6.4e-07 3.7e-05 24.0 1.1 1 23 188 211 188 211 0.98 8 21 2.5 1.5e+02 3.2 2.8 1 23 219 241 219 242 0.95 9 21 0.00017 0.01 16.3 0.1 1 23 254 277 254 277 0.98 10 21 0.0012 0.069 13.7 0.7 1 23 303 326 303 326 0.98 11 21 5.9 3.4e+02 2.1 0.4 2 21 334 353 333 354 0.89 12 21 0.016 0.94 10.1 2.2 2 23 363 385 363 385 0.95 13 21 0.0036 0.21 12.2 6.6 1 23 406 429 406 429 0.97 14 21 8.5e-05 0.0049 17.3 0.4 2 23 436 458 435 458 0.96 15 21 0.00014 0.008 16.6 3.9 2 23 465 487 464 487 0.94 16 21 0.0067 0.39 11.3 2.2 1 23 493 516 493 516 0.97 17 21 0.17 9.9 6.9 7.1 2 23 524 546 524 546 0.95 18 21 0.00011 0.0065 16.9 0.8 1 23 553 576 553 576 0.96 19 21 0.015 0.84 10.3 1.4 1 23 583 606 583 606 0.89 20 21 0.15 8.7 7.1 2.0 5 23 623 642 620 642 0.90 21 21 5.4 3.1e+02 2.2 0.1 1 12 692 703 692 706 0.89
Sequence Information
- Coding Sequence
- ATGTATCAAAGTCAACTAGACTTTGTGTGTGACTACTGCTCAAGAACTTTTACAAGGAAATATAACTTACAGACACATATAGAGAACTGTCATATCAACGCATCATGTCATTGCAATATCTGCGGCCAAGATTTTGGCAGCCCCGCCGGGTTACTGCAACATTTATCTCGAGGCCACAACAACTACAATCAACCGTTCCCAGAATGTGAATTATGCGGACGGATTTTTACAAGAAAACAGAACATTATGTCTCATATGATAACTGTACATTTACAAGGACTTGGATATGATATACGTTGCCGGTTGTGCAAAAAAACGTTTACCACGGAACGGAATTTAAAGAGACATATCAATCAGTTACATAACCCCGATGTTGAATACCCGACGTGTAACGATTGTCATAAAGTTTTCAAAGGGAAACACTCCTTGATTGCCCACATTCAGTCCGTACACAACGTTACTGAAAGGGATGCTATCAAGTGCCATCTCTGTGAGAAAGTTTACACAAACAACAGGAACTTAAAACGACACATTGAAATGTTTCACGGTGTTAAAGGAGAATTTAGATGTGATATATGCCCTAAGGTTTACACTTCAAACCAGAGTTTGAGACGCCACGCAAGAACGAGACACGCAACCGACAACCAGGAGCAGTATTCGTGCAATTTTTGCTTGAAAGTGATAATAGGGAGAGTGAATTTCGACAGCCATCTCCAACACCATCACCAAGACACAGAAACAGACAGTAAAATGGCGGACTTTGTCTGCGAATCTTGCGACAAAGGCTTTGAAGATGAACCGTTGTTGCGACAACACGTAAAAACGGATCATTCATTTAAGATTTTCTACAAATATTGCAAGAATTCTTTGCTCAAGCAGTACGGAATGGACACGGAAAATAGTATATACACTTGTGAATTTTGTGACAATTCTTTCTTGACTGTTTACGAACTTAAGGACCATATGCGCGTTAATCATGACACTGAATATTCTCTATCTACATGCAATGTGTGCTTCGATAAATTCTACAGTAAAGAAACTATATTTGCGCACAAAAACGTATGTCTACCACCGGATAACGTGAACTCTTGCAGTCATTGCGATAAGCTATTCACCGATATTTCCAGCTTAGAATTTCACACGAGAATTTTTCATCCCCAAGCCCAAATTGCTGATTCCAACATCTCCTCAACAAACATTGATGAAGAAGTCTCTTTTAAGTGTAAACATTGCGATCGAATTTACTACAGCGATCGATCGCTCAAACATCACATAAAGTTGAAGCATACCACAGATGAGGAAGTGGAATGCGAATCTTGTGGAAAAATTTGCAGCAACAAATACTACTTGGCATCACACATAAAAATAGTCCATAATAATGATTCCTGGTCCCGCTGTGAATACTGTGATAAACAATTCAAATCTAAGAGGAATATTAGAAGACATATTGAGCACACACATCTGGGAATGCAACGGTACAAGTGTATCGAGTGCGAGACTTTGTTTAAAGAAAAACGAAGTTTGCGAAAACATGTTCGGACGAAGCACCCAGATTCGACGGCCTTCCCACAATGCCACATTTGTCATAAACGTTTTGAGTCAGCGAAATCTTGTAAGATACATCTCAAACTGCTGCATTCGTTCAATATGAATACGTTTCCATGCCATTTGTGTTCAGTTTCCTTTAGTTCAAATGAAGCCCTGAATATACATCTACAGAACAAACACTTAGCTGAAGACCAGATTTACAAATGCGAGGAATGCAATTTAGTCTTCAAGGGACAGGAGAAGTTCGACGCCCACAACGATGTTTGCCACGTGAATTTGGTCCCTAATATCAAGCAGAAAATTCTACCACGATGCATTCTGTGCATGAAAGATTTCAGTACAATAAAAACTTTGAAACGGCATATTAAGAAATTCCATGAAGAATTTGATGTAGATGAATTGGCGACGTTTGGTTCCAGACGGAGGACGTTCACTGTGGATTGTGAAAACTGTATCAAAAATTTTAATGACGACTTTCATCTAAATGTCTACAACAAGTTAAAACATTTGAGAGACTCCAAAGTTTTCAAGTGCGAACTTTGTTTGGAGTCGTACAGTTCTCTGGAATTCGCAATACAGAAGTACAAACTCACGAATGCCGAGGCTTGTAAAAGCAAGATGATTTTGAGCGAACTGTGCACAGCTGAAATGAGCGAGGAGGAGACTGATTTCTCTCACTTCGGCGCTTTACACGACATGTTACCTGAAAGTACAACGATGGACATAAAATTGGAACCTTTTGAAAACTTATTTGACAATGATATTAAGGTGGAACCGTCTTCGCCGTAA
- Protein Sequence
- MYQSQLDFVCDYCSRTFTRKYNLQTHIENCHINASCHCNICGQDFGSPAGLLQHLSRGHNNYNQPFPECELCGRIFTRKQNIMSHMITVHLQGLGYDIRCRLCKKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVTERDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHATDNQEQYSCNFCLKVIIGRVNFDSHLQHHHQDTETDSKMADFVCESCDKGFEDEPLLRQHVKTDHSFKIFYKYCKNSLLKQYGMDTENSIYTCEFCDNSFLTVYELKDHMRVNHDTEYSLSTCNVCFDKFYSKETIFAHKNVCLPPDNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIDEEVSFKCKHCDRIYYSDRSLKHHIKLKHTTDEEVECESCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEHTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPDSTAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCHLCSVSFSSNEALNIHLQNKHLAEDQIYKCEECNLVFKGQEKFDAHNDVCHVNLVPNIKQKILPRCILCMKDFSTIKTLKRHIKKFHEEFDVDELATFGSRRRTFTVDCENCIKNFNDDFHLNVYNKLKHLRDSKVFKCELCLESYSSLEFAIQKYKLTNAEACKSKMILSELCTAEMSEEETDFSHFGALHDMLPESTTMDIKLEPFENLFDNDIKVEPSSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00274598;
- 80% Identity
- iTF_00274598;