Ckad005339.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381697.1:106337-111374[+]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.3 8.3e+03 -3.0 0.0 41 49 185 194 165 199 0.45 2 8 0.0023 14 5.8 0.0 30 71 215 256 205 258 0.80 3 8 0.0085 52 4.0 0.0 27 71 258 304 251 306 0.72 4 8 0.019 1.2e+02 2.9 0.0 42 67 303 328 293 334 0.72 5 8 0.028 1.7e+02 2.4 0.0 41 66 316 341 302 348 0.53 6 8 0.13 8.2e+02 0.2 0.0 45 65 334 354 321 360 0.73 7 8 0.00067 4.1 7.6 0.0 23 71 364 414 357 417 0.75 8 8 0.0047 29 4.9 0.0 42 71 427 456 415 457 0.79
Sequence Information
- Coding Sequence
- ATGCGAGGAGCTGGCTTCTCGTGCGGCCCCAGCACAGACGACCTGGTAACGAACCGCTTCCACCAAATGGACTGTACCATGAACGGTCATGCTACAGTCCATTTGGTGGAAGCTGATCGGTACCAGCATACACGGCCGAGAGTCGCGTTCAGTATGCGCGTCACCGCCGTGGTCACCGCACACCGCTCTCATCGCTGCAGATCGATGAAAATGAGCGTGTATTTTACGAGCAAAAGGAGGATAAGCAACACAATCCAGCACTTCACTCCACTTGCCAACCGTCATGATACACTCCGGACGGTGGGCGCTGCTGTCCGACGCGCAGGAGCCAAGCTTACATTACCCGCAAGCCGCTGCCACAGAGGTGACAGCACTGAGCGTGGCTCGCTGCGGTCCCTAACGTACCGGACAGTAAGTAGAGATAACAATATGTTTATTTTGGAGTCGATATTGTCGCACTTGTCCAGAGCTGACAACGCCGTATTGATCTGCAACGCGCCCAACACTCATATTGTCAGTATAGCAGCGACATCACGTCGCCGCCCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGACATCACGTCGCTGCCCGACATGCAACGCACCCAACACTCTTATTGTCAGTATAGTAGCGGCATCACGTCGCCGCCCGACATGCAACGCGCCCAACACTTATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGACATCACGTCGCCGCCCGACATGCAACGCGTCCAACACTTATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACATTCATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGACATGCAACGCGTCCAACACTCATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGGCATCACGTCGCCGCCCGATATGCAACGCGTCCAACACTCACATTGTCAGTATGGTAGCGGCATCACGTCGCCGCCCGACATGCAACGCGCCTAACACTCATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGACATGCAACGCGCCCAACACTCATATTGTCAGTATAGTAGCGGCATGCAACGCGCCCAATACTCATATTGTCAGTATAGTAGCGGCATGCAACGCGCCCAATACTCATATTGTCAGTATAGTAGCGGCCACGACTCTTGAGCACAAACGTTAG
- Protein Sequence
- MRGAGFSCGPSTDDLVTNRFHQMDCTMNGHATVHLVEADRYQHTRPRVAFSMRVTAVVTAHRSHRCRSMKMSVYFTSKRRISNTIQHFTPLANRHDTLRTVGAAVRRAGAKLTLPASRCHRGDSTERGSLRSLTYRTVSRDNNMFILESILSHLSRADNAVLICNAPNTHIVSIAATSRRRPTCNAPNTHIVSIVATSRRCPTCNAPNTLIVSIVAASRRRPTCNAPNTYIVSIVATCNAPNTHIVSIVATCNAPNTHIVSIVATSRRRPTCNASNTYIVSIVATCNAPNIHIVSIVATCNAPNTHIVSIVATCNAPNTHIVSIVATCNASNTHIVSIVATCNAPNTHIVSIVAASRRRPICNASNTHIVSMVAASRRRPTCNAPNTHIVSIVATCNAPNTHIVSIVATCNAPNTHIVSIVAACNAPNTHIVSIVAACNAPNTHIVSIVAATTLEHKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -