Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: Bcl11b
Assembly: GCA_932526535.1
Location: OW052115.1:8437733-8445467[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 1.3e+02 3.6 0.1 3 23 124 144 122 144 0.95

2 15 0.0018 0.12 13.1 2.8 1 23 283 305 283 305 0.99

3 15 0.0043 0.27 12.0 0.1 1 23 311 334 311 334 0.95

4 15 0.0066 0.42 11.4 1.6 1 23 339 362 339 362 0.94

5 15 8.4e-05 0.0053 17.4 1.5 2 23 524 545 523 545 0.97

6 15 0.00019 0.012 16.2 3.2 1 23 551 573 551 573 0.98

7 15 0.66 42 5.1 3.5 1 23 636 658 636 658 0.94

8 15 0.56 36 5.3 0.4 2 23 666 687 665 687 0.96

9 15 0.00069 0.044 14.5 2.3 1 23 693 715 693 715 0.96

10 15 0.0017 0.11 13.3 5.5 1 23 721 743 721 743 0.98

11 15 0.004 0.25 12.1 5.3 1 23 752 774 752 774 0.99

12 15 0.0053 0.34 11.7 2.1 2 23 813 834 813 834 0.97

13 15 0.015 0.97 10.2 6.4 1 23 850 872 850 872 0.96

14 15 1.6e-06 0.0001 22.8 0.7 1 23 878 900 878 900 0.98

15 15 5.4e-07 3.5e-05 24.2 3.1 1 23 906 929 906 929 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	1.3e+02	3.6	0.1	3	23	124	144	122	144	0.95
2	15	0.0018	0.12	13.1	2.8	1	23	283	305	283	305	0.99
3	15	0.0043	0.27	12.0	0.1	1	23	311	334	311	334	0.95
4	15	0.0066	0.42	11.4	1.6	1	23	339	362	339	362	0.94
5	15	8.4e-05	0.0053	17.4	1.5	2	23	524	545	523	545	0.97
6	15	0.00019	0.012	16.2	3.2	1	23	551	573	551	573	0.98
7	15	0.66	42	5.1	3.5	1	23	636	658	636	658	0.94
8	15	0.56	36	5.3	0.4	2	23	666	687	665	687	0.96
9	15	0.00069	0.044	14.5	2.3	1	23	693	715	693	715	0.96
10	15	0.0017	0.11	13.3	5.5	1	23	721	743	721	743	0.98
11	15	0.004	0.25	12.1	5.3	1	23	752	774	752	774	0.99
12	15	0.0053	0.34	11.7	2.1	2	23	813	834	813	834	0.97
13	15	0.015	0.97	10.2	6.4	1	23	850	872	850	872	0.96
14	15	1.6e-06	0.0001	22.8	0.7	1	23	878	900	878	900	0.98
15	15	5.4e-07	3.5e-05	24.2	3.1	1	23	906	929	906	929	0.98

Sequence Information

Coding Sequence: ATGAACCACACAGCAGCCGCATTACCTGGCAACATGGATGTTGACCCGCTGAGCTCGTTTGAGTACCCCGTGTACGATAACTATGCCCCACAGCCCTATCCGTACGCCAACAAATTGCAACAGTCCATATATGAGGCGTACCAACAAACCAACGCAAACTACATGAACAACGGTCGCCCCCAAGAAGTCTTCAACAATGTAAACCACGCCTTACCACCACCACAAACGTCTGCAGACCTTGAAACACCGACTAAAACTGAAGAAACAACCACCAAACCAGCGTTAAAAAAGAGGAGGAAGGAGAAAAGCGGCCAGAAAAGTACTTACTGTTCTGAGAAGATCACGGATGCTACGTTCAAGTTCTACGGCTGTGCGGTCTGCAACGTCAGCTACAACGCACTGCACGAACTGGACCAGCACGTGACCGTCCACAAGAATAGAATGACAAGCTACAGACTGCGATTGAGAAACCAAATCAAAAAGAAACAAATCAAAAAAGAAAAGAGAAAGTTAAAAAAGATGATTAAAATTAAAAAAGAAGCGGAGGTTGACGTTGAGATCAAACCGGAGGACGGTTATATAGGAGAGGAGAAGGCGGCGGATTTTATTAATACTGAAGTTAATCCTAGTTCGGGATGTAACGGAGGTGATATCAACACAAACGGTGCGGTTCAACTACAAAATAGTGAAATTAATTCCAATAACAACACGAATTCTGTAAATAATGAAACTTTGTTGACAAATGGGACCGTGAGTAACAAACATAATGAAACGGATACCGGGAACAACACACATTGTAAAGAGAACAGTATGGACGAGGCAGAGTTAAATAATTTAGAGAAAATATACAAATGTTTTGCGTGTCAGAAGCAGTTCACGTTGAGTTATTATTTGAAACTACACGTGAGATCACATACAGACGAGAAGCCGTACGCGTGCGGCGCGTGCGGGCAGGCGTTCATCACGGCGAGCAAGCTGGGGCGGCACAACAAGCGTATCCACCTGGCGGAGCGCTACCAGTGCCGCGTCTGCTTCAAGATATACTCCAGGTTCGAGCTACTGACGGCGCACTTCGACAAGACGCACCCCGACGACAAGCTGGAGGGAGAGCCCTACGACTACAACGCGATACTCCCGTACCTGAAGGAGCTGGAGGAACAGCTCCGTGCGCCGGCGGACAGCAAGCCCAAGGTGGAGGAGCTGTGCTGGGAGCAGCCCGCCTCGCCCCTCCACGTCAAGGAGGAGGCGCAGGACGAGGACCAGAAGGATCTGGTGCCGAAGCTGGACATCACCATCGAGGAGGTGAAGGTGGACTTCGACGTCGAGATCAAGCGCGAGGTGTCCGACGACGAGCAGGGGGGCGGGGGGGACCACCAGGGGGACGGGGGGGACCACCAGGGGGACGAGGGGGACCACCAGGGGGACGACGTCGACGTCAAGGGGGAGGACAGTACGTCGGACGAGGACTACTTCCCGTCGAACACGTGGGCGGCGGCCGCGCCCCCGTCGCCGGGCGCGCCCCCGTCTCCCCGGCGGCGGGGGCGCGCTCGGGGGCGCGGCGCCCCCACCACGTGCGGCGTGTGCCACAAGAGCATCAGCAGCGCGTCCTACATGCGCATCCACATGCGCACGCACACCGGCGAGAAGCCCTTCAAGTGCTACACGTGTGGCCGCGGCTTTATCACCAGCAGCAAGATGCACCGACACGTGCTCACGCATGCGCAGGACAAGGACGCAGTAAAGACAGAAGAAGACGACACCACACCGGAAGCGGATGAGCCGCCCGCCATAGAGCAGCAGGAAGACGGTGACAAGAAACCGGCGAAGAAAAAGTCGAAAATGAAGTCGAAGTCGAAGCTGAAGAACGGGGAGTCGAAGCCGCGCGGCAAGCATCAGAAGCGACCGCACGCCTGCGAGTACTGCAACCAGAAGTTCCTGCACCTGAACATGCTGGAGGTGCACAAGCAGCAGCACGCGGGCGAGCCGCGCGTGCTGCGCTGCCACTACTGCCTGCACGAGGCGGCAGACGAGCCCGCACTGCAGGCCCACGTCACCACGCACCAGGGGGCCAAGCCCTACCTCTGCACCATCTGCGGGAAGACCTACAAGAAGCGGGAGACCATGGTGTACCACCGCAAGCGTCACTCGTCGGAGGCGGAGTTCGTGTGCGAGATGTGCTCGAAGCGGTTCAACGCGGCGTGCAAGCTGCGCAAGCACATGCACACGCACCGAGCCACACGCGTCGTGCTGCGCTACGAGTGTCCCGTGTGCGCGCACATGTTCAACACCAAGTACCACGTGCACATGCACCTGCGCTCGCACCAGCGGGAGGGCCTGATCCTGGAGCAGGACCGCAGCCAGGTGCTGGCCATGGTGCTGCAGAACGCGCGCCAGCTGCCCGCGCCGCCAGGCCCGCCGCCCGACGAGCGCTCGCGCGTCTGCAACATCTGCGGCGAGCTGTTCCACCACTTCTACTACCTGGAGGAGCACCTCAAGAGCCACGGCGAGCGCATCGCCGTCGCGCCCGACGCGCTCGACACGCGCAAGCACGTCTGCCCCGTGTGCCACAAGGCCTTCAAGCTGCACTACTACCTCAAGCTGCACAGCTTCACGCACTCCAAGGAGAAGCCCTTCATCTGCCAGCAGTGCGGCAAGGGCTTCATCACCAAGGGCAAGCTCAAGCGCCACCTGGAGACGCACACGGGGCTCAAGAAGTACCAGTGCCACATCTGCTACAAGTTCTTCACGCGGCCGAGCTACCTGCGCATCCACGTGCGCACCATCCACGGCACGCAGGACTACAACTTCCGCCTGGACAAGAGCTACGCCACGCTCGCGCCACACGCGGCACACGCTCCGCTCGCCACGCACGCGCCACAACCCGCCGTGCCCGACCTCGGCCCGGTCAGCAGCGTGCTGTGA
Protein Sequence: MNHTAAALPGNMDVDPLSSFEYPVYDNYAPQPYPYANKLQQSIYEAYQQTNANYMNNGRPQEVFNNVNHALPPPQTSADLETPTKTEETTTKPALKKRRKEKSGQKSTYCSEKITDATFKFYGCAVCNVSYNALHELDQHVTVHKNRMTSYRLRLRNQIKKKQIKKEKRKLKKMIKIKKEAEVDVEIKPEDGYIGEEKAADFINTEVNPSSGCNGGDINTNGAVQLQNSEINSNNNTNSVNNETLLTNGTVSNKHNETDTGNNTHCKENSMDEAELNNLEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYACGACGQAFITASKLGRHNKRIHLAERYQCRVCFKIYSRFELLTAHFDKTHPDDKLEGEPYDYNAILPYLKELEEQLRAPADSKPKVEELCWEQPASPLHVKEEAQDEDQKDLVPKLDITIEEVKVDFDVEIKREVSDDEQGGGGDHQGDGGDHQGDEGDHQGDDVDVKGEDSTSDEDYFPSNTWAAAAPPSPGAPPSPRRRGRARGRGAPTTCGVCHKSISSASYMRIHMRTHTGEKPFKCYTCGRGFITSSKMHRHVLTHAQDKDAVKTEEDDTTPEADEPPAIEQQEDGDKKPAKKKSKMKSKSKLKNGESKPRGKHQKRPHACEYCNQKFLHLNMLEVHKQQHAGEPRVLRCHYCLHEAADEPALQAHVTTHQGAKPYLCTICGKTYKKRETMVYHRKRHSSEAEFVCEMCSKRFNAACKLRKHMHTHRATRVVLRYECPVCAHMFNTKYHVHMHLRSHQREGLILEQDRSQVLAMVLQNARQLPAPPGPPPDERSRVCNICGELFHHFYYLEEHLKSHGERIAVAPDALDTRKHVCPVCHKAFKLHYYLKLHSFTHSKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLDKSYATLAPHAAHAPLATHAPQPAVPDLGPVSSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00274625;
90% Identity: -
80% Identity: -