Ccla019420.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052117.1:5727425-5729761[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0026 2.5 8.4 0.9 18 43 9 31 5 32 0.93 2 19 0.18 1.7e+02 2.5 0.3 18 44 37 60 33 60 0.70 3 19 0.00029 0.28 11.5 0.0 18 43 68 90 64 91 0.94 4 19 8.8e-05 0.084 13.1 1.3 17 44 98 122 95 122 0.92 5 19 0.00037 0.36 11.1 1.2 18 44 129 152 127 152 0.94 6 19 4.6e-05 0.044 14.0 1.2 15 43 157 182 153 183 0.89 7 19 0.0043 4.1 7.7 0.5 18 43 189 211 185 212 0.89 8 19 0.1 97 3.3 0.4 18 43 220 242 214 244 0.76 9 19 5.4 5.1e+03 -2.2 0.2 35 44 269 278 268 278 0.91 10 19 0.67 6.4e+02 0.7 0.0 16 43 302 326 289 327 0.72 11 19 0.24 2.3e+02 2.1 0.1 14 27 359 372 355 386 0.81 12 19 0.026 25 5.2 4.6 16 43 405 429 397 430 0.87 13 19 0.0011 1 9.7 5.0 12 43 459 487 450 488 0.83 14 19 0.076 72 3.7 1.2 17 44 493 517 490 517 0.84 15 19 0.47 4.5e+02 1.2 1.0 18 28 524 534 520 547 0.82 16 19 0.65 6.2e+02 0.7 0.6 19 43 555 576 548 577 0.79 17 19 0.0002 0.19 12.0 2.8 7 43 607 642 604 643 0.77 18 19 0.57 5.5e+02 0.9 0.1 15 40 660 687 652 689 0.85 19 19 0.33 3.2e+02 1.7 0.5 12 27 687 702 680 704 0.80
Sequence Information
- Coding Sequence
- ATGTATCAAAGTCAACTAGACTTTGTGTGCGATTACTGCTCAAGAACGTTCACAAGAAAATATAATTTACAAACTCATATAGAGAACTGTCATATCAACGCATCATGTCACTGTGACATCTGCGGGCAAGATTTTGGCAGCCCAGCCGGCTTACTACAACATTTATCCCGAGGTCACAATAATTACAACCAGCCTTTCCCAGAATGCGAACTATGCGGACGAATATTTACAAGAAAACAGAACATTATGTCCCATATGATCACCGTACATCTCCAAGGACTTGGATTTGACATACGCTGTAGACTGTGCAAGAAAACATTCACCACGGAACGGAACTTGAAAAGACATATTAATCAGTTGCATAACCCGGATGTAGAATATCCTACTTGCAATGATTGTCATAAAGTTTTTAAAGGGAAGCATTCATTAATTGCTCATATTCAATCGGTTCATAATGTCAGTGAGAAGGATGCTATCAAATGCCACCTCTGTGAGAAAGTTTACACGAACAACAGAAACTTGAAACGTCACATTGAAATGTTTCACGGTGTAAAAGGAGAATTTAGGTGTGATATATGCCCTAAAGTTTATACTTCAAATCAGAGTTTGAGACGCCATGCGAGGACGAGGCATACGACGGACAATCAGGAGCAGTTTTCTTGCAATTTTTGCATGAAACTGATCATAGGACGGGAGAATTTCGACAGCCATGTACAATACCATCATCATGAAACAGAAACAGATACTAAAATCGCGGATTTTGTCTGCGATTCTTGCGACAAAGGCTTTGAGGACGAACCTTTATTACGACAACACGTCAAAACGGAGCATTCTTTCAAGACTTTCTACAAGTATTGCAAGAATTCCTTGCTGAAACAGTACGGAATGGACACCGAAAACATTATTTACACTTGTGAATTCTGTGACAATTCATTTTTAACTGTATATGAGTTGAAAGACCACATGCGTGTCAATCATGATACTGAATACTCTCTTTCTACCTGCAATGTCTGCTTCGACAAGTTTTACAGTAAAGAAACCATGTTTGCACATAAAAATGTGTGTTTACCGCCGGACAACGTTAATTCTTGCAGCCACTGTGACAAGCTTTTTACCGATATTTCTAGCTTAGAATTCCATACGAGGATTTTTCATCCACAAGCTCAAATCGCTGATTCTAACATCTCATCTACCAACATCGATGAAGAAGTTTCTTTTAAGTGTAAGCACTGTGATCGTATTTATTACAGCGATAGATCTCTCAAGCACCATATAAAGTTGAAACATACGACAGATGAGGAAGTTGAATGCGAATCTTGTGGCAAAATTTGCAGCAACAAATACTATTTGGCATCACACATAAAAATCGTGCATAATAATGATTCTTGGTCCCGATGTGAGTACTGTGACAAGCAATTCAAATCTAAAAGAAATATAAGAAGGCATATAGAGCATACACATTTGGGCATGCAACGGTATAAGTGCATCGAGTGTGAGACGCTGTTTAAGGAAAAACGGAGCTTACGCAAACACGTTCGGACGAAGCACCCAAATTCGACAGCGTTCCCACAATGCCATATTTGCCACAAGCGTTTCGAATCAGCGAAATCTTGCAAGATACATCTGAAATTGCTGCATTCGTTCAATATGAATACGTTCCCGTGTCATTTGTGTTCGGTTTCCTTCAGTTCAAATGAAGCCCTAAAAATACATCTCCAGACTAAACACTTAGCAGAAGACCAGATTTACAAATGCGAAGAATGCAATTTAGTTTTCAAGGGACAGGAGAAATTCGATGCACATAACGATGTGTGCCACGTGAATTTAGTCTCTAATATCAAGCAGAAAGTACTGCCAAGATGCATTCTTTGCATGAAGGATTTCAGTACAAGGAAAACGCTAAAACGTCACATTAAGAAATTCCATGAAGAATTTGATGTGGATGAATTGGCTACATTCGGTTCTAGACGCAGGACGTTTACAGTCGATTGCGAGAATTGTATCAAGAATTTCAACGACGATTTTCATCTAAATGTCTACAATAAGTTGAAACATTTGAGAGATTCAAAAGTTTTTAAGTGCGAATTTTGTTTGGAGTCATACAATTCTCTGGAATTCGCGATTCAGAGGTATAAATTGACGAATGCTGAAGCTTGTAAAAGCAAGATGATTTTGAGCGAGCTGTGTACCACTGAGATGAGTGAAGAAGAGACTGATTTCTCTAACTTCGGAGCTCTACATGACATGCTGCCTGAAAGCACGACTTTGGACATAAAATTAGAACCATTTGATAATTTATCTGATACGGATATCAAGATGGAACCGCCTTGGCCGTAA
- Protein Sequence
- MYQSQLDFVCDYCSRTFTRKYNLQTHIENCHINASCHCDICGQDFGSPAGLLQHLSRGHNNYNQPFPECELCGRIFTRKQNIMSHMITVHLQGLGFDIRCRLCKKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVSEKDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHTTDNQEQFSCNFCMKLIIGRENFDSHVQYHHHETETDTKIADFVCDSCDKGFEDEPLLRQHVKTEHSFKTFYKYCKNSLLKQYGMDTENIIYTCEFCDNSFLTVYELKDHMRVNHDTEYSLSTCNVCFDKFYSKETMFAHKNVCLPPDNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIDEEVSFKCKHCDRIYYSDRSLKHHIKLKHTTDEEVECESCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEHTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCHLCSVSFSSNEALKIHLQTKHLAEDQIYKCEECNLVFKGQEKFDAHNDVCHVNLVSNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEEFDVDELATFGSRRRTFTVDCENCIKNFNDDFHLNVYNKLKHLRDSKVFKCEFCLESYNSLEFAIQRYKLTNAEACKSKMILSELCTTEMSEEETDFSNFGALHDMLPESTTLDIKLEPFDNLSDTDIKMEPPWP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00274598;
- 80% Identity
- iTF_00273814;