Ccla019354.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052117.1:4222938-4232663[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.3 5.8e+03 -2.6 0.0 82 108 39 65 28 74 0.76 2 5 7.4 1.3e+04 -3.7 0.1 82 97 138 153 132 173 0.62 3 5 0.00014 0.25 11.5 0.0 18 91 275 349 270 368 0.85 4 5 6.1e-06 0.011 15.9 0.0 17 86 369 438 363 458 0.86 5 5 0.0043 7.5 6.7 0.0 20 58 463 501 450 519 0.86
Sequence Information
- Coding Sequence
- ATGGCTCCTGACAATTATAATGAGATAAAGGTGTGCAGGGTGTGCCTTGCACTGGATGTCAAAATGTATGATATGAAAGATTCAAAATGGGGTCAGATGTTTCAAAATGTCACCGGATTATTGGCTTGCAACAAGAAGAGCACAACTCACCTCGTTTGTTGGGAATGCGCTGCCCGACTTTCAGCGGCTGCAACATTCAAAGACAAAGCGCTACTAAGCGATGCCTTGCTTAAAGATTTAGTACACATACAACTTAACGACATCCTGACAATAAGAAAAAACTACAGTTATTTAAAATCTACCTTAACTGTTCATAAAATTTTGACATCTTCTGATATTTTAAATGAAGATTCCAAAGAAATAGAAGTACTTTTACATACAGACAAAAATGAAAATGTCAAAGAGACTGCACCAGAAATAAATCAAGTTAAAAAAGAAAATGATAACTTTGAGCTATGGATAGATATACCAATGAAAATTAAAGTAGAAAATGATCCTATAGCTGATAACAGTACGAATATTGAAGAGACAGATCCTATACCTGATAACAATATCAATATAGAAGACAAAAAAGTCTTTTCAGAAACAAATTTAAGTAATGACAGACAAGGTATTGACGATGAAATGAGTAATAATGATGATGACACAGTAATGAATGGTGAAGAAGAAGATAAAAAGCCAGTGATTGATGAAAAAGGTGATGTTGTGGAGAATAGTGAGACCAGTTCTAGTGAAGAAGATTCAGATGGAGAGTCTAGTAGTGATGCTAAAACGAAAATGTGTAATAAGGTTAGGACTAAGAAAGGAAAAGCAAATGTCAGAATCAACGATAAATTAAAAGAAAAAATAATTGAGTTGAAGAAAAACGGGGCCCCTGCTGTTGGCATAGCTAGGGAGACAGGATTGTCGATATCAGCTATTAATGGTTTTTGGGGTCGTTACTGCAAGAGTGGAAACACTTACCGAAAGTCTAACGCAGAGGGGTCGGCAGAAAAGGAGGACAAAACTGAAGCCTCTAGCTCAATTAAGGAACAGAGGTTGCATACAGCGAATATTGACCATAAAACGCGTACAGAAATGAAAAAGAGAATTAGTAAGCATAAAGAGCTTCATGAAGATTTGAAACAACGCATAATAGCGCTCAAGAAGGAAGGAATGTCTAACAGGCGGGTAGCTTGTGTTCTCAAAACTTCCCGTAGTACGGTTCGTAAGTGGTGGGACCGCTGGAGTTATGAAGGTCATATGGATAACTCCTCGGTTCAAGGTCGAAAGAGGAGGAAGACTACTCCTCAAGAAGATCAGCTCATAATAGACCGGGTGATGCAAGAAAAGAGCGTACACACCCCAACTTTAGCGAAGGAATTGGGTGTTTCTACAAGAGTCGATGCGAAGACCAAACAGCAAATAATTTCCATGAAACAAAATGGCGTCTCAGTTACCGAGATAGCTAACCAATTTCGAGTGACACGAACATCTGTATACGAATGGTGGCGACGTTGGTGTCATGATAATAAGATTGACGCGACCAGTGATAATGCTCCAAGTACGGCGACTGTACATGATCAGGATGCATCAGAAGATAGTACAGTGGGATCCACTGTCATATCGTCGTACAAGTCTGTATGGCAGAAATTATCAGATGAAGAGTCTGTTTCTTAG
- Protein Sequence
- MAPDNYNEIKVCRVCLALDVKMYDMKDSKWGQMFQNVTGLLACNKKSTTHLVCWECAARLSAAATFKDKALLSDALLKDLVHIQLNDILTIRKNYSYLKSTLTVHKILTSSDILNEDSKEIEVLLHTDKNENVKETAPEINQVKKENDNFELWIDIPMKIKVENDPIADNSTNIEETDPIPDNNINIEDKKVFSETNLSNDRQGIDDEMSNNDDDTVMNGEEEDKKPVIDEKGDVVENSETSSSEEDSDGESSSDAKTKMCNKVRTKKGKANVRINDKLKEKIIELKKNGAPAVGIARETGLSISAINGFWGRYCKSGNTYRKSNAEGSAEKEDKTEASSSIKEQRLHTANIDHKTRTEMKKRISKHKELHEDLKQRIIALKKEGMSNRRVACVLKTSRSTVRKWWDRWSYEGHMDNSSVQGRKRRKTTPQEDQLIIDRVMQEKSVHTPTLAKELGVSTRVDAKTKQQIISMKQNGVSVTEIANQFRVTRTSVYEWWRRWCHDNKIDATSDNAPSTATVHDQDASEDSTVGSTVISSYKSVWQKLSDEESVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -