Cruf034093.2
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376306.1:4079528-4084453[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0045 58 5.0 0.0 19 44 182 207 176 214 0.86 2 5 0.062 8e+02 1.3 0.1 12 44 394 425 391 428 0.81 3 5 9.2e-05 1.2 10.4 0.0 21 45 429 453 422 456 0.88 4 5 0.091 1.2e+03 0.8 0.0 25 44 543 562 534 570 0.86 5 5 0.00091 12 7.2 0.1 20 49 594 623 577 626 0.85
Sequence Information
- Coding Sequence
- ATGGAATTGGAGTGCCGAACGTGTCTGAAAATTACCAAAAACCTCTGCGATTTATTTTCGAACGATTTACCGCAGAAAATCGAAGCGATTTCTTCCGTAGAGATTTTGGAAGGCGACGGATTTTCTTCCAAAATATGCGACCTGTGTGAACGAAACGTTCATTTGTTGTACGACTTTCGAAATATAATCAGACGGAGCAACGTGGTTCTGCAGCAGCGCAGCATGAAACAGGAAAGCAGTGAAAACGTAGACCACCAAACCGCAGAATATGAAACTGCGAATATTCAAGTGGTCGAAACGAAATTGGAACCCATCGTCGAAGTAGACCTTGTGTATCTGAACGACGCCATTAAAAAGGAAGTCGAAACGGGGAAAGAAAATAAAGACGAAAAAAAGGTGTACACATGTAAAGACTGCGAATTTACAACTCAAAATTATAATTCTTTGCGGACACATAAAAAGATTCATAAGGAGGTAGTGCGAACCGTGTGTACCACCTGCGGAAAATCTGTTATAAAAGCCTACCTGCGAAGCCACCTCTTGTCTCACTCCGAAACGCCGATTTCTTGCGAAGTCTGCGGAAAGATGGTTAAAAATATTGGATGTTTAAAGGCGCATATGTTTATCCACAATGGCCAACCGTTGCAGTGTTCCGAGTGCGGGAAGATTTATAAAAATCGGCCGAGATACTATGCACACAAACGAAGACACGCACATGATTTGCAAGACTTGTTTACAGAGGATTGCGATTTGCCGCATAAAATCGAAACGATTTCGTCGATTCAGATTTTGGTCAACGATCAATTCCCTTCGAAAATTTGTCATTCCTGCGTAACAAACGTCGAATTTCTGTACGATTTTCGTGGTATCGTAAGAAGAAGCAACATGATTTTGGAAAGCCGTGTCTGCAGCGCTCAGAAGCAGGAAACCAACGACAGTGGTAAAAATGAACTAACAGACACCGAATTAATTCAAATCGACGAAATTAAAATGGAGTCTGAAATCGAAAGTTTGGATTTTGAGGATCCCGTTGAAAGCAAAGAAGAAATAACTAACGAAGAAGTGTTGACTTGTCGTGGAACTATTCGAAAAAGTAATCGAGGAAAAAAAACTATAGCCAACAAGGTTTACAATTGTACAGAGTGCGATTTCAACACCGAGCATTATAATTCTCTCAGAACTCACCGCAAGCGACACAAAGACAGACAAGAACTGAGATCCATTTGCAACATTTGCGGGAAATCGATCACGACCGATAATTTAAGTAAGCACCTGTCCAATCATACCGACACCCCGGTTACATGTAAAATTTGTGGAAAGGTGGTTAAGCACAAGGAGAGCTTACGGGGACACATGTACATGCACAAAGGCATCACACTTCAATGCACGTTTTGTGGAAAGATTTTTCATAATCGGCAGTCCTACTACAAACATCTCCAAAGACACAAAACACACTGTTCTACGATGGAAAAAAGTAACATGAAAACGAAGTTCTACGAGTGCCTTTCTGAAAAACCGCAAAAGAGTAACAGTTTTCAGATAAGTACGGAAAAGTATCGTAAACTAATAGAAGACGTAAAATCGGCTAAAAGTGGAATTCGGAAGGAAAATGGTGGAGCCaagactgtgaaatgtcccatgtgcgaaaagctcttccacgagaaaaaatcgttaacaaaacacatacggtctcacacgggggagcgaccctacccgtgcgaatactgcaagaaaggattttccagtccgtacgcattaaaaactcacgtaaggcaacacaccaatgaaaaaccttttgcttgcgatttctgtgacatggcattcCCGCAGCGAGTTTCGCTTCGCACGCATTTGAAATCGAAGCATCCGGATAAAACTTTGGACCCAAGTAGTTAA
- Protein Sequence
- MELECRTCLKITKNLCDLFSNDLPQKIEAISSVEILEGDGFSSKICDLCERNVHLLYDFRNIIRRSNVVLQQRSMKQESSENVDHQTAEYETANIQVVETKLEPIVEVDLVYLNDAIKKEVETGKENKDEKKVYTCKDCEFTTQNYNSLRTHKKIHKEVVRTVCTTCGKSVIKAYLRSHLLSHSETPISCEVCGKMVKNIGCLKAHMFIHNGQPLQCSECGKIYKNRPRYYAHKRRHAHDLQDLFTEDCDLPHKIETISSIQILVNDQFPSKICHSCVTNVEFLYDFRGIVRRSNMILESRVCSAQKQETNDSGKNELTDTELIQIDEIKMESEIESLDFEDPVESKEEITNEEVLTCRGTIRKSNRGKKTIANKVYNCTECDFNTEHYNSLRTHRKRHKDRQELRSICNICGKSITTDNLSKHLSNHTDTPVTCKICGKVVKHKESLRGHMYMHKGITLQCTFCGKIFHNRQSYYKHLQRHKTHCSTMEKSNMKTKFYECLSEKPQKSNSFQISTEKYRKLIEDVKSAKSGIRKENGGAKTVKCPMCEKLFHEKKSLTKHIRSHTGERPYPCEYCKKGFSSPYALKTHVRQHTNEKPFACDFCDMAFPQRVSLRTHLKSKHPDKTLDPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273053;
- 90% Identity
- iTF_00273053;
- 80% Identity
- iTF_00273053;