Basic Information

Insect: Cantharis rufa
Gene Symbol: -
Assembly: GCA_947369205.1
Location: OX376308.1:18727657-18743615[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.28 38 6.1 0.3 2 20 549 567 548 572 0.89

2 12 0.0058 0.78 11.4 1.9 2 23 587 609 586 609 0.93

3 12 0.13 17 7.1 1.1 1 23 614 638 614 638 0.92

4 12 0.053 7.1 8.4 1.8 2 23 653 675 652 675 0.95

5 12 0.0016 0.22 13.1 0.2 1 21 680 700 680 701 0.92

6 12 1.6 2.2e+02 3.7 4.3 1 23 760 781 760 781 0.87

7 12 2.8e-05 0.0037 18.7 0.5 1 23 787 809 787 809 0.98

8 12 0.0051 0.68 11.6 2.8 3 23 832 852 830 852 0.95

9 12 0.045 6 8.6 0.1 1 23 857 881 857 881 0.92

10 12 0.0067 0.89 11.2 3.5 1 23 887 909 887 909 0.97

11 12 0.00068 0.09 14.3 5.5 1 23 915 937 915 937 0.99

12 12 0.00099 0.13 13.8 1.6 3 20 945 962 943 964 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.28	38	6.1	0.3	2	20	549	567	548	572	0.89
2	12	0.0058	0.78	11.4	1.9	2	23	587	609	586	609	0.93
3	12	0.13	17	7.1	1.1	1	23	614	638	614	638	0.92
4	12	0.053	7.1	8.4	1.8	2	23	653	675	652	675	0.95
5	12	0.0016	0.22	13.1	0.2	1	21	680	700	680	701	0.92
6	12	1.6	2.2e+02	3.7	4.3	1	23	760	781	760	781	0.87
7	12	2.8e-05	0.0037	18.7	0.5	1	23	787	809	787	809	0.98
8	12	0.0051	0.68	11.6	2.8	3	23	832	852	830	852	0.95
9	12	0.045	6	8.6	0.1	1	23	857	881	857	881	0.92
10	12	0.0067	0.89	11.2	3.5	1	23	887	909	887	909	0.97
11	12	0.00068	0.09	14.3	5.5	1	23	915	937	915	937	0.99
12	12	0.00099	0.13	13.8	1.6	3	20	945	962	943	964	0.94

Sequence Information

Coding Sequence: ATGATCGACAATTTCGAAGACGATACTCACTACTGCATCAAATGTCATCTGACTATTGTCGGATTGGAAAATTATATCAACCACCGTAAATCTAAATGTGGAAAAGAACTCGATGAGTCCAAAAAATCTGACGACGTAGCGTCCGAGTTGCTCGAAAAACCTCTCAACCTAGAAGCCGACGATTTTTTTTCCTCTCTTGAATTACAGAGCAGCGCCAAGAAGAGCATCAATCATTCTCCGGGAGGCAAATCTTTCAGTGGAATTTTAACTCGAAGCAAAGCAATCGCGGTGCTTCAAGCGAACAGCCAAAGCAAAGATACCTTAGAGTTGAACAATTTGAAAAACAATAGTGGAGAATGGATTACCGAAACGGAGCACAACAAAACGCCAACCAGGAAGGAGGTTAGTCTTCATCAAAGTTATGAGGAAATCGAAGAAGATTCGGACGATTACGAGTACGAAGATGGCGACCTTTTTGAAGACGACGAGGAAGAAGAGGACGTTCCTCCTCGATCATTTACGGGTGGTAAATGGAAGCCGACGTCTTCGCCTGTCCAGTGGCAGCGCACTCACGATGATAACTATTGGATTGTGCCTCAACCGCATCACACGGGCGGCAAATGGAAACCACAAGCGTTCAACAAAACCGAAGAAACGTACGACGTTCCACCACCGAGTTTCACGGGAAGCAAGTGGACACCATCGCGAGTTTTAACCTCCGAAAATAAAATTAAATCAAAAATGTCAATTTTTACTGCTAGCCACGAGAAGTGGGATAACGTTCCTCCTCCCGAGCACACCAAAGGTAAATGGAAACCGACGCAATCGTTTTTTTCCCACCAAGAGGAAGAACCTAAAGAATCACCTCAGCAAGTGAAATGGAAAGTTAACGAAGAAACGCCACCGTCGTCGTACACACAGGGAAAATGGAAACCCGAAAAGTCACAAGTTAAACCTGAAATATCACCGTTACGAAAATCGAGCGGAACAGTGCAATATTGGTGTAGACCTTGCGATCGGCGTTTAGCATCAAAAATTGTGTACGAACGCCACTTAAAATCGGAATTACATTTTAAACGCACTTTAAACGACAGCGAGTTCGACGACTCACCTTATTTAAATACAAGCTTCGTCACCAATAAGAGAAAGTCAAGCAAATCGCCGGAATACAGCGCACGTACCGACATAAAAACTACAAAAACCGTTTCCGGCACTAAAACGCAAGGTAGATCTCGGAAGAAAATTTTTATAACGTGCGAAGGGTGCGACTCGAAGGTTAATTGTCAACTGATAGGTAAACATTTAATTTCTCATTATCACTGTCGTAAAACCGACATGAATTTGTTGAAATCGCAACTGATGGTTTTGGAAAATATTCACAGTATAATTTTGCAATCGCCTTATCAGTGTAGTCCATGCAAATTTTATTGCAATACTCACGAATGGTTTCTGCAGCATTGGCTTTCCGAAAGTCATAATGCAATAATTTTAACGCCCGAAAGTCTCTTCTGGTGTTGCGTTTGTAAGTTTCGTGCCAAAAATTCAAAAGCAATGTTCGATCACTTGTCATCGAACGAGCACAACGACATCAATTTGGCCATCAATAGGTCTGTTCCGGTGGTGATTAAAAAGTTTACCCCCATTAAATGTCCTACGTGCCTGTTGGAATTCAAATTGAACATTGAGTTAAGAAAACACAACGAAAAGGAAAATCATTCGCACAGTTTGACGAGTACCGACAGTTATCAAAATAAATGCGAATGTACCCAATGCGATGCTGTTCTCAAATCTAGAAGAGCTTTACAGCGGCATCAAATGTTCAGCCACAACGCCGAGACGTTCATCTGCTCGGTCTGCTCTTTAAATTTTAATTCCAAATTAGAAGCGAAGCATCACAGAAATACGCCCGAACATCGTTGCGCAGTAGAAGAAAAAAATCGGAAGGATGCCAGCAAAACTTGTCAACACTGTAAAACTGTTTTAAAAAATATCGTCGAGTTAAGAGAACATCTGAAGGAAAATCATCCTGCGGAAATGCACAGTTGTTCCAAGTGTGGAAAAAGTTTTATCATCCCTCAAGATTTGGCGGTTCACAATAGGAAAAACGCATGCAGTTTCGAAAATTTCACCGAGTCAAAATCGAACGCTTGCGATCAATGTCAGTTCAATACGGATTCCACGTCAGAACTATTATTCCACAAAGTTCTGCACACCGAACCCCTGATGGTTCGTCCAGAAGATAAAAGCGACGAAAGTAAAAAATATCCGGTTGCCCATTACAAGTGTCAAATTTGTCAGAAATTTTATCCAAAACTTTCGTTGCGTTGTCACCTAAGAATGCACACCAACGAACGACCGTTTGTGTGTACGATTTGTAATTCTGGGTTCGTCCGGAAAAATAATTTAATTTTGCATATGAAAAATCACGACAAGAAGAGCATTTCTCAGATTGGAAACCCTTCGTCGAAGGAGGAAGGCGAGCGTCTGCACTTGTGTTCCACCTGTGGAGCAAGCTTCAAAAAAAGGTCCATTTTACAACAGCATATGACAAGACACACCGGAAAGCTATATAATTGCGTCGAAAGTGATTGCTTATTTTCCGCACGTTCCCGTGCCGAATTAAAGGCTCACATGATCACTCATTCCAGTGGCACACCTTTTAATTGCCAACTTTGCGAATATCAAGGAAAATCGAAGCAGCATTTAAAAAGGCACATGACAATTCACAAAAGAGAAAAAAGTTATCAATGTACGCAGTGTTCGTTTACCACCAGATTATCGTCACATCTTAAACGACATCAAAGATTGCACACAGGTGCTAAACCTTTCGGTTGTCCCCATTGTGACTACTCCTGCAATAATTTAGAGAATTTACGCAAGCACGTCTTGCAAACCAATAAGCATCCGGGAAAATGCATATACGAGTGCAAATTTTGCAAGGACGATGTTTTCGGCTCAAATTTTGCCAAGGAGTTCAAACTGCATCTCATGGCCAAACATTCCGATGTATTTTTAACCATAAAGGATGCTTCCAATTACGTCACACAAATCTATCAGAACGATAACGGCAAAGACGAGACGTCCATAGATTCGCTCGACAAGGAATGGTACGAGTATTTTATCCAAAATTGTGATTCAATTAAACAATCGATTTCTAGCACTTCGAAAAGTATGGAACATCAGACGGACCAAATTTTAACACAGATTCAGGAACTGACGCCCAAATTGAATTCGTCCAGTAGTGCAATCGAATCGACAATTTTGTTTACGTCTATTACCAATCCAGAGGCTTCAGAGCATACGAAAATTCACGAAGAGTTGTTTCCCATGTTGGTTTCGAGCAAAGTTGGCAACTCTTCCGAGTTGTGGAATATTGGAGGAAATTACGATGTCGAAGAGTCGGGGATTCTGATACCTTTTCATTCCGACAGAGAAACGTTACTCAACGACCATTTTCAATAA
Protein Sequence: MIDNFEDDTHYCIKCHLTIVGLENYINHRKSKCGKELDESKKSDDVASELLEKPLNLEADDFFSSLELQSSAKKSINHSPGGKSFSGILTRSKAIAVLQANSQSKDTLELNNLKNNSGEWITETEHNKTPTRKEVSLHQSYEEIEEDSDDYEYEDGDLFEDDEEEEDVPPRSFTGGKWKPTSSPVQWQRTHDDNYWIVPQPHHTGGKWKPQAFNKTEETYDVPPPSFTGSKWTPSRVLTSENKIKSKMSIFTASHEKWDNVPPPEHTKGKWKPTQSFFSHQEEEPKESPQQVKWKVNEETPPSSYTQGKWKPEKSQVKPEISPLRKSSGTVQYWCRPCDRRLASKIVYERHLKSELHFKRTLNDSEFDDSPYLNTSFVTNKRKSSKSPEYSARTDIKTTKTVSGTKTQGRSRKKIFITCEGCDSKVNCQLIGKHLISHYHCRKTDMNLLKSQLMVLENIHSIILQSPYQCSPCKFYCNTHEWFLQHWLSESHNAIILTPESLFWCCVCKFRAKNSKAMFDHLSSNEHNDINLAINRSVPVVIKKFTPIKCPTCLLEFKLNIELRKHNEKENHSHSLTSTDSYQNKCECTQCDAVLKSRRALQRHQMFSHNAETFICSVCSLNFNSKLEAKHHRNTPEHRCAVEEKNRKDASKTCQHCKTVLKNIVELREHLKENHPAEMHSCSKCGKSFIIPQDLAVHNRKNACSFENFTESKSNACDQCQFNTDSTSELLFHKVLHTEPLMVRPEDKSDESKKYPVAHYKCQICQKFYPKLSLRCHLRMHTNERPFVCTICNSGFVRKNNLILHMKNHDKKSISQIGNPSSKEEGERLHLCSTCGASFKKRSILQQHMTRHTGKLYNCVESDCLFSARSRAELKAHMITHSSGTPFNCQLCEYQGKSKQHLKRHMTIHKREKSYQCTQCSFTTRLSSHLKRHQRLHTGAKPFGCPHCDYSCNNLENLRKHVLQTNKHPGKCIYECKFCKDDVFGSNFAKEFKLHLMAKHSDVFLTIKDASNYVTQIYQNDNGKDETSIDSLDKEWYEYFIQNCDSIKQSISSTSKSMEHQTDQILTQIQELTPKLNSSSSAIESTILFTSITNPEASEHTKIHEELFPMLVSSKVGNSSELWNIGGNYDVEESGILIPFHSDRETLLNDHFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294576;
90% Identity: iTF_00270615;
80% Identity: -