Clat013508.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720626.1:3102419-3113801[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 7.1 8.1 0.5 2 21 542 561 541 565 0.89 2 12 0.012 0.61 11.4 1.9 2 23 580 602 579 602 0.93 3 12 0.19 9.9 7.6 0.4 1 23 607 631 607 631 0.92 4 12 0.11 5.6 8.4 1.8 2 23 646 668 645 668 0.95 5 12 0.00031 0.016 16.4 0.1 1 22 673 694 673 694 0.95 6 12 0.54 28 6.2 3.3 1 23 753 774 753 774 0.87 7 12 5.6e-05 0.0029 18.7 0.5 1 23 780 802 780 802 0.98 8 12 0.01 0.53 11.6 2.8 3 23 825 845 823 845 0.95 9 12 0.025 1.3 10.4 0.2 1 23 850 874 850 874 0.92 10 12 0.013 0.7 11.2 3.5 1 23 880 902 880 902 0.97 11 12 0.0023 0.12 13.7 5.9 1 23 908 930 908 930 0.98 12 12 0.00032 0.017 16.3 2.2 1 20 936 955 936 957 0.94
Sequence Information
- Coding Sequence
- ATGATCGACAATTTCGAAGATGATACGCATTACTGCATCAAATGTCATCTAACCATTGTCGGATTGGAAAATTACATTAACCACCGTAAATCCAAATGTGGAAAAGAACCCGATGAGTCCAAAAAATCCGACGTAGCCTCCGAATTGCTGGAGAAACCGCTCAACCTAGAAGCCGACGATTTTTTTTCGTCCCTCGAATTGCAAAGCAGCGCCAAGAAAAGCATTACTCACTCTCCCGGAGGCAAATCTTTCAGTGGAATTTTAACCAGAAGCAAAGCAAACGCGGTGCTTCAAGCCAGCAACCAAAGCAAAGATTCCTTAGAGTTAAACAATTCCAAAAACAATAGTGGGGAATGGATCGCCGAAACGGAACAGAACAAAACGCCCACTAGGAAAGAAGTTGGTCTGCATCAAAGTTATGAGGAAATCGAAGAAGATTCTGACGATTACGAGTACGAAGATGGCGACCTTTTTGAAGACGACGAGGAAGAAGAGGACGTTCCTCCTCGATCGTTTACGGGGGGTAAATGGAAACCAACGTCTTCGCCTGTCCAGTGGCAGCGCACTCACGACGATAACTATTGGATTGTGCCTCAACCACACCACACGGGAGGGAAATGGAAACCACAAGCATTCAACAAAGCCGAAGAAACGTACGACGTTCCGCCACCAAGTTTTACGGGGAGCAAGTGGACACCTTCTCGAGTTTTAACTtcggaaaacaaaattaaaccaaaaatttcaatttttactgcAAGTCACGAAAAGTGGGACAATGTTCCTCCTCCTGAGCACACCAAAGGTAAATGGAAACCGACGCCATCGTTTTTTTCGCCCCACGAGGAGGAACCCAAAGAATCGCCTCCACAAGTGGAAACGCCACCGCCGTCGTACACGCAGGGAAAATGGAAACCCGAAAAGTCAGAAGTAAAACCGGAAATATCGCCGCTACGAAAATCAAGCGGAACAGTTCAATATTGGTGTAGACCCTGCGATCGGCGTTTAGCATCAAAAATTGTGTACGAACGCCACTTAAAATcggaattacattttaaacgcACTTTAAACGACAGCGAGTTCGACGACTCaccttatttaaatacaaactttGTCGCCAATAAGAGAAAGTTAAGCAAATCGCCAGAATATAGCGCACGTACCGAcataaaaactacaaaaaccGTTTCCGGCACTAAAACGCAAGGTAGATcccgtaaaaaaatttttataacgtgCGAAGGGTGCGACTCGAAGGTTAATTGTCAACTGATaggtaaacatttaatttctcATTATCATTGTCGTAAAACCGACATGAATTTGTTGAAATCGCAACTGATGGTTTTGGAAAACATACAcagtataattttgcaatcgcCATATCAGTGTAGTccatgcaaattttattgcaatactCACGAATGGTTTCTGCAGCATTGGCTTTCGGAAAGTCATAATGCAATCATTTTAACTCCCGAAAGTTTCTTCTGGTGTTGCGTTTGCAAATTTCGTGCCAAAAATTCAAAGACAATGTTCGATCACTTATCGTCGAGCGAGCACAACGACATCAATTTGGCCATCAATAGGTCCGTTCCGGTGGTGATTAAAAAGTTTACCCCCATTAAATGTCCGACGTGCCGGTTGGAATTCAAATTGAACATCGAGTTAAGAAAGCACAGCGAAAAGGAAAATCATTCGCACAGTTTGACGAGTTCCGAcagttatcaaaataaatgcgAATGTACCCAATGCGATGCCGTGCTCAAATCTAGACGAGCTTTACAGCGGCATCAAATGTTCAGCCACAACGCCGAGACCTTCATATGCTCGGTCtgctctttaaattttaattccaaattgGAAGCGAAGAATCACAGAAATACGCCAGAACATCGGTGCGCGGTGGaagaaaaaaatcagaaagaTGCCAGCAAAACTTGTCAGCACTGTAAGAccgttttgaaaaatatcgtCGAGTTAAGGGAACATCTGAAGGAAAATCACCCGGAGGAAATTCACAGTTGTTCCAAGTGTGGAAAAAGTTTTATCATTCCTCAAGATTTGGCGGTTCACATCAGGAAGAACGCGTGCAGTTTCGAAAGTGTGAGCGAGTCGAAATCAAACGCCTGCGATCAATGCCAGTTCAATACGGATTCGACGTCGGAATTATTATTCCACAAAGTTCTGCACACCGAACCGCTGATGGTTCATCCGGAAGACAAAAGCGacgaaagtaaaaaatatccGGTTGCTCATTATAAGTGTCCAATTTGTCAGAAATTTTATCCGAAACTTTCGCTGCGTTGTCACCTAAGAATGCACACCAACGAGCGACCGTTTGTCTGTACGATTTGTAATTCTGGATTCGTccggaaaaataatttaattctgcaTATGAAAAATCACGACAAGAAGAGCATTTCGCAGATTGCAAGCACTTCGTCCAAAGAGGAAGGCGAGCGTCTGCACTTGTGTTCCACCTGTGGAGCAAGCTTCAAAAAAAGgTCCATTTTACAACAACATATGACAAGGCACACCGGAAAGCTGTATAACTGCGTCGAAAGTGATTGCTTATTTTCCGCACGTTCCCGTTCCGAATTAAAGGCTCACATGATCACTCATTCCAGTGGCACACCTTTTAATTGCCAACTTTGCGAATATCAAGGAAAATCGAAACAGCATTTAAAAAGGCACATGACTATTCACAAAAGAGAAAAAAGTTATCGATGTACGCAGTGTTCGTTTACCACCAGATTATCGTCACATCTTAAACGACATCAAAGATTGCACACAGGTGCTAAACCTTTCAGTTGTCCCCATTGTGACTACTCGTGCAATAATTTAGAGAATTTGCGCAAACACGTCTTGCAAACCAATAAGCATCCGGGAAAATGCATATACGAGTGCAAATTTTGCAAGGAAGACGTTTTCGGGTCGAATTTTGCCAAGGAGTTCAAACTGCATCTCATGGCCAAACATTCCGATGTCTTCTTAACCATAAAAGATGCTTCCAACTACGTCACGCAAATTTATCAGAACGATAACGGCAAAGACGAGACGTCCATAGATTCGCTCGATAAGGAATGCACATCGAAAAGTATGGACCATCAGAGGGaccaaattttatcacaaattCAGGAACTCACGCCCAAATTGAATTCGTCCAGTAGTGCAATCGAGTCCACAATTTTGTTTACGTCTATTACCAATCCGGAGGCTTCGGAACATACCAAAATCCACGAAGAGTTGTTTCCCATGTTGGTTTCAAGCAAAGTTGGTAATTCTTCCGAGTTGTGGAATATCGGCGGAAACTACGATGTCGAAGAGTCGGGGATTTTGATACCTTTCCATTCCGACAGAGAAACGTTACTCAACGaccattttcaataa
- Protein Sequence
- MIDNFEDDTHYCIKCHLTIVGLENYINHRKSKCGKEPDESKKSDVASELLEKPLNLEADDFFSSLELQSSAKKSITHSPGGKSFSGILTRSKANAVLQASNQSKDSLELNNSKNNSGEWIAETEQNKTPTRKEVGLHQSYEEIEEDSDDYEYEDGDLFEDDEEEEDVPPRSFTGGKWKPTSSPVQWQRTHDDNYWIVPQPHHTGGKWKPQAFNKAEETYDVPPPSFTGSKWTPSRVLTSENKIKPKISIFTASHEKWDNVPPPEHTKGKWKPTPSFFSPHEEEPKESPPQVETPPPSYTQGKWKPEKSEVKPEISPLRKSSGTVQYWCRPCDRRLASKIVYERHLKSELHFKRTLNDSEFDDSPYLNTNFVANKRKLSKSPEYSARTDIKTTKTVSGTKTQGRSRKKIFITCEGCDSKVNCQLIGKHLISHYHCRKTDMNLLKSQLMVLENIHSIILQSPYQCSPCKFYCNTHEWFLQHWLSESHNAIILTPESFFWCCVCKFRAKNSKTMFDHLSSSEHNDINLAINRSVPVVIKKFTPIKCPTCRLEFKLNIELRKHSEKENHSHSLTSSDSYQNKCECTQCDAVLKSRRALQRHQMFSHNAETFICSVCSLNFNSKLEAKNHRNTPEHRCAVEEKNQKDASKTCQHCKTVLKNIVELREHLKENHPEEIHSCSKCGKSFIIPQDLAVHIRKNACSFESVSESKSNACDQCQFNTDSTSELLFHKVLHTEPLMVHPEDKSDESKKYPVAHYKCPICQKFYPKLSLRCHLRMHTNERPFVCTICNSGFVRKNNLILHMKNHDKKSISQIASTSSKEEGERLHLCSTCGASFKKRSILQQHMTRHTGKLYNCVESDCLFSARSRSELKAHMITHSSGTPFNCQLCEYQGKSKQHLKRHMTIHKREKSYRCTQCSFTTRLSSHLKRHQRLHTGAKPFSCPHCDYSCNNLENLRKHVLQTNKHPGKCIYECKFCKEDVFGSNFAKEFKLHLMAKHSDVFLTIKDASNYVTQIYQNDNGKDETSIDSLDKECTSKSMDHQRDQILSQIQELTPKLNSSSSAIESTILFTSITNPEASEHTKIHEELFPMLVSSKVGNSSELWNIGGNYDVEESGILIPFHSDRETLLNDHFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294576;
- 90% Identity
- iTF_01294576; iTF_00273240; iTF_00272031;
- 80% Identity
- -