Basic Information

Insect: Cantharis rufa
Gene Symbol: -
Assembly: GCA_947369205.1
Location: OX376307.1:8663088-8665043[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.04 5.4 8.7 4.8 2 23 86 107 85 107 0.97

2 20 6.4e-06 0.00085 20.7 1.9 1 23 113 135 113 135 0.98

3 20 2.5e-06 0.00033 22.0 4.5 1 23 141 163 141 163 0.98

4 20 1.1e-05 0.0014 20.0 0.2 1 23 169 191 169 191 0.97

5 20 0.00014 0.019 16.5 1.3 1 23 197 219 197 219 0.98

6 20 2.7e-07 3.6e-05 25.0 2.1 1 23 225 247 225 247 0.99

7 20 9.1e-06 0.0012 20.2 6.1 1 23 253 275 253 275 0.98

8 20 0.093 12 7.6 11.0 1 23 281 303 281 303 0.99

9 20 2.6e-06 0.00034 22.0 1.3 1 23 309 331 309 331 0.98

10 20 0.00029 0.038 15.5 2.8 1 23 337 359 337 359 0.97

11 20 0.00055 0.073 14.6 3.1 1 23 365 387 365 387 0.98

12 20 1.8e-05 0.0024 19.3 3.2 1 23 397 420 397 420 0.96

13 20 1.9e-05 0.0026 19.2 1.9 1 23 426 448 426 448 0.99

14 20 1.9e-05 0.0025 19.2 1.5 1 23 454 476 454 476 0.98

15 20 7.6e-05 0.01 17.3 2.3 1 20 482 501 482 505 0.91

16 20 0.39 52 5.6 6.1 1 23 516 538 516 538 0.98

17 20 3.3e-06 0.00044 21.6 5.2 1 23 544 566 544 566 0.98

18 20 0.00011 0.015 16.8 1.9 3 23 574 594 572 594 0.96

19 20 0.0013 0.18 13.4 0.1 1 23 600 623 600 623 0.93

20 20 3.2 4.3e+02 2.8 3.2 1 23 629 651 629 651 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.04	5.4	8.7	4.8	2	23	86	107	85	107	0.97
2	20	6.4e-06	0.00085	20.7	1.9	1	23	113	135	113	135	0.98
3	20	2.5e-06	0.00033	22.0	4.5	1	23	141	163	141	163	0.98
4	20	1.1e-05	0.0014	20.0	0.2	1	23	169	191	169	191	0.97
5	20	0.00014	0.019	16.5	1.3	1	23	197	219	197	219	0.98
6	20	2.7e-07	3.6e-05	25.0	2.1	1	23	225	247	225	247	0.99
7	20	9.1e-06	0.0012	20.2	6.1	1	23	253	275	253	275	0.98
8	20	0.093	12	7.6	11.0	1	23	281	303	281	303	0.99
9	20	2.6e-06	0.00034	22.0	1.3	1	23	309	331	309	331	0.98
10	20	0.00029	0.038	15.5	2.8	1	23	337	359	337	359	0.97
11	20	0.00055	0.073	14.6	3.1	1	23	365	387	365	387	0.98
12	20	1.8e-05	0.0024	19.3	3.2	1	23	397	420	397	420	0.96
13	20	1.9e-05	0.0026	19.2	1.9	1	23	426	448	426	448	0.99
14	20	1.9e-05	0.0025	19.2	1.5	1	23	454	476	454	476	0.98
15	20	7.6e-05	0.01	17.3	2.3	1	20	482	501	482	505	0.91
16	20	0.39	52	5.6	6.1	1	23	516	538	516	538	0.98
17	20	3.3e-06	0.00044	21.6	5.2	1	23	544	566	544	566	0.98
18	20	0.00011	0.015	16.8	1.9	3	23	574	594	572	594	0.96
19	20	0.0013	0.18	13.4	0.1	1	23	600	623	600	623	0.93
20	20	3.2	4.3e+02	2.8	3.2	1	23	629	651	629	651	0.94

Sequence Information

Coding Sequence: ATGGACTCGATTAATTTAACATCCGATATTTGTATTAAACAAGAATTTGCAGATCTCGGTACTATCACACAAGAAGACTCCAATGGTAATTCTACAACGAGAAATCAATTAACTGGTTTATATGAAAATCTTAAAGTTGAAACTGTTAAGTTAGAAAATATTTCTGAAGTGGAAAGCGTTGCAGATGATGTCGAACGTGTCGTTTTCATTAAAGACGAACTAGCAAGTGATGTTTATAAATGCAACAAATTACGTACGTGTCAGTTTTGTACTAAAACATTTCAGTGTGATTCGCAACTCAACGTTCACATGAGGTCGCACAGCAATTTACGACCGTTTTCATGTTACGTCTGTTCGAAATCGTTTAAAGACGTTTCCACTCTTAACTCTcacttgaaaacgcattcgtcagaaaggccgtttaattgtgaatcctgcagtaaatcgtttaaacttaattcgcacttacagcgacatattaggactcacaatggtgaaaaacctttcaagtgtgccgagtgtccgaaagcatatactactaaacgagggttaactaatcacataatcggtcacttgggtacgaaaccgttcagttgtcttgtttgttctaaaactttcaagaacgaaaagtcattaccggatcacatgaaaactcacacaggagaaaagccatatacatgtgagttttgcaataaggcttttaggcaaaagcagcagttgacagttcacatcaagactcatacagacgaacgaccacataaatgcgacgtttgcttgaagtcgtttcgggataaaagaacgttgacacatcatatcagaactcacactggcgaaaagccatacaaatgcgagcattgcgattttcattgtgcgaagaagcacacgttaaccgttcactctcgccgacacaccgatgaaaaaccctacgaatgtacctactgctataagcgattcgcacaaagtagcagcctggtggtccatcgtcgactgcacaccggtgaaaaaccctacgtttgtgatcaatgcggccaaagatttacactaaaatatagtttaagatatcacaaatatcggcacgacggcgttcgagcctacaagtgcgaattttgtgacaGCACCTTTTTCACTCCCTTCTCGTTGAAATCGCACCGAAAGTTACACTTTGCTATTAAACCAAAGAAAGCAATTTATGATTGCAAAATATGTGATAAGTTTTATTCGACGCGCTCTTCGTTAAAATTACATCACCTACGTGTTCACATCAAATTAAAAAAATTTAAATGCACtttgtgccagagcgcatttgttcacaccgccgaactgaaacgccacatgagaatacacaccggtgaaaaaaatcacaaatgcgaaatatgcgaaaaattattttccgccaaacaaagtttgagaattcacatgaggatccacaacggtgcaaagccctacaaatgtagatactgctccaaagctttcacaacgagcacCCAATTGAAAATTCACAACGTAAATTTTCATTTCGATTTGATCAGTCAAGACGTTAATCCATACAAGTGTAATCAGTGCAGTTACACGACGTTACATAAGACTTACTACAAACGCCATTTGGTGACGCATTTGGGGATTAAATTGTACAAGTGTTACATCTGCAATAAATCGTTCACCAGATCGTACACCTTGAAACTACACATACAACATCACAGCGATAAAAGTAATTTGGATTGTTTACACTGTAAAGAAAGTTTTCCTTCCAAGATGCTGCTACGAAAGCACCTGAAAGTACATAGAAATCCCAAGCGATACAAATGCACCTTGTGCTTGAAGGCGTTTGTTACGTCGACTGTTTTGAACATGCACATTGCTGGAGTCCATAATAAAGTGCGAGCTTTTAGATGTAAGGTTTGCACCTACAAGACATTGAAGTATAGTCTCTTCGTGAGACACAAAGAATCCCATTAA
Protein Sequence: MDSINLTSDICIKQEFADLGTITQEDSNGNSTTRNQLTGLYENLKVETVKLENISEVESVADDVERVVFIKDELASDVYKCNKLRTCQFCTKTFQCDSQLNVHMRSHSNLRPFSCYVCSKSFKDVSTLNSHLKTHSSERPFNCESCSKSFKLNSHLQRHIRTHNGEKPFKCAECPKAYTTKRGLTNHIIGHLGTKPFSCLVCSKTFKNEKSLPDHMKTHTGEKPYTCEFCNKAFRQKQQLTVHIKTHTDERPHKCDVCLKSFRDKRTLTHHIRTHTGEKPYKCEHCDFHCAKKHTLTVHSRRHTDEKPYECTYCYKRFAQSSSLVVHRRLHTGEKPYVCDQCGQRFTLKYSLRYHKYRHDGVRAYKCEFCDSTFFTPFSLKSHRKLHFAIKPKKAIYDCKICDKFYSTRSSLKLHHLRVHIKLKKFKCTLCQSAFVHTAELKRHMRIHTGEKNHKCEICEKLFSAKQSLRIHMRIHNGAKPYKCRYCSKAFTTSTQLKIHNVNFHFDLISQDVNPYKCNQCSYTTLHKTYYKRHLVTHLGIKLYKCYICNKSFTRSYTLKLHIQHHSDKSNLDCLHCKESFPSKMLLRKHLKVHRNPKRYKCTLCLKAFVTSTVLNMHIAGVHNKVRAFRCKVCTYKTLKYSLFVRHKESH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271522;
90% Identity: iTF_00271522; iTF_00270120; iTF_00268797;
80% Identity: -