Cruf033275.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- lov
- Assembly
- GCA_947369205.1
- Location
- OX376307.1:33805670-33807685[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-15 1e-12 48.6 0.0 1 44 387 430 387 431 0.95
Sequence Information
- Coding Sequence
- ATGAGCGAATCACATTACTCGTTACGATGGAATAATCACCAGGCGCACATGCTAAATTCGTTCGAAGCGTTATTTCAGACAGAATCTCTCGTAGACGTGACGCTGGTGTGTGAGGAGTTTTCAATTCGGGCTCACAAAGTCGTATTGAGCGCAGGTTCGCCCCTTTTCGAAAAAATAATTTCAGAAAATCCGTGCAGGCATCCGGTTATTGTTTTGAAAGATTATACCGGATGGGAAATTCAATCTGTGGTGGACTTTATGTATAAAGGTGAAATTAGTGTTGCGCAAGAACACTTGCAAAGTCTAATTAAAGCAGCGGAAAGTCTACAAGTGCGTGGTTTAGCTCAAGATGCTTTTGAGGCAGAAAAAGAATTTAACGCCATAACAAATCAAACGCCCACACCGTCGGCATCCCCAAATGAATTCGACCGAAATTTTTATTCAAGTCGACGCGGTGCTTCTACAACAATATCCACGACATTGCCCACCGACAGACCGTCGTCTCCTTTTAATACAACAAATTCCCTGATTAACTACGAAAGTGGTCATAAGTTGCCACATATGAATCACTTAAGTTTTTCCGATACGCTCGTACCACGATCGGATAGTCAATCTCCAATACCTCGAAGAAAACAAGCGAGGCCCAGGAGAAGATCTGGAGAAATGTGTGTAGCCCAAGACCTTACTACCAATAGTACAAAATCGACATCACCATCGCAAGACGTAGCCGAAAATTTAAGTGTTAAAAGGAAACTACACGAGTTTGACGCGTCGAAATCTAAATTAAATAAAGTAGATGTTTCTAAAAGTCCAGAATTGGATTTAAATATGCCACTAGAAAAAGATTACGATCATTCTCCATCTTTATCAATTCCTCCGGTTCTTAACTTACATCAGGACATGGACACTCATTCTACACATTCGCCGTTGCCTTTCCCTCCAATGCCGTCAGTTTCAGCTCTAGCGATGTCGTCACCTAAATTTTTCGGTTTAGATTCGCCATTGGGTTTATTTCCAAACAGTATAGATTGCAGAAATCCCCTCTTAGAAATGGCAGATCCAAGGAATACGCCAGATCAGCAGTTCTATAACAAGAAAAAAATAGGAAGGCCCAAAGGTCAACATTCCGCCCCTCGGGGTGGACCGCCCAGGTCGTGGACAAATGCAGAACTAACTGAAGCTTTACAACAGGTTTGGTACAAAAAAATGACAACGAGTCAAGCGTCTAGAGTATTTGGAATACCCTACAATTCACTTCTAATGTATGTTCGAGGAAAATATGGTAAAAGTCTAAAATTGGAGCAGTTGAGGCAAGACTGTATAAACGGGACGCCGCCCGATTACATGGGTAGTTTGAGAAGTAATAATAATAATAATTGCAAATCAGAACCACGCGAATTAGAAGCTGTTCAACCAAACACGAGGCCTTCCAGCAGGGAACAACAGTCGCCACCTCAATCACACATGTATAATCATTTCACACCAAATTTTTATCCAGATTTTGGAACACCGTTTCCAATTCCGGTAAACATGATACACTTACTCCCACAGAGTGAAAAGAATCGCGATCAGTACTCCTCTCAACCGCTACAATCTATAGAAGTTAACTCAAAAAGTGATCGGATTAAACTAGAAAACGAAAGTAGAGAAGTCGTAAAACAAAACGGGCAAAATTAG
- Protein Sequence
- MSESHYSLRWNNHQAHMLNSFEALFQTESLVDVTLVCEEFSIRAHKVVLSAGSPLFEKIISENPCRHPVIVLKDYTGWEIQSVVDFMYKGEISVAQEHLQSLIKAAESLQVRGLAQDAFEAEKEFNAITNQTPTPSASPNEFDRNFYSSRRGASTTISTTLPTDRPSSPFNTTNSLINYESGHKLPHMNHLSFSDTLVPRSDSQSPIPRRKQARPRRRSGEMCVAQDLTTNSTKSTSPSQDVAENLSVKRKLHEFDASKSKLNKVDVSKSPELDLNMPLEKDYDHSPSLSIPPVLNLHQDMDTHSTHSPLPFPPMPSVSALAMSSPKFFGLDSPLGLFPNSIDCRNPLLEMADPRNTPDQQFYNKKKIGRPKGQHSAPRGGPPRSWTNAELTEALQQVWYKKMTTSQASRVFGIPYNSLLMYVRGKYGKSLKLEQLRQDCINGTPPDYMGSLRSNNNNNCKSEPRELEAVQPNTRPSSREQQSPPQSHMYNHFTPNFYPDFGTPFPIPVNMIHLLPQSEKNRDQYSSQPLQSIEVNSKSDRIKLENESREVVKQNGQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270073;
- 90% Identity
- iTF_00270998;
- 80% Identity
- iTF_00272940;