Cnig020493.2
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- lov
- Assembly
- GCA_958510845.1
- Location
- OY294031.1:29795419-29797442[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-15 8.8e-13 48.6 0.0 1 44 387 430 387 431 0.95
Sequence Information
- Coding Sequence
- ATGAGCGAATCACATTACTCTTTACGATGGAATAACCACCAGGCGCACATGCTAAATTCGTTCGAAGCGTTATTTCAGACAGAATCCCTCGTAGACGTAACGCTGGTGTGTGAGGAGTTTTCAATTCGGGCTCACAAAGTAGTATTGAGCGCAGGATCGCCCcttttcgaaaaaataatttcagaaaatccCTGCAGGCATCCGGTTATTGTTTTGAAAGATTATACTGGTTGGGAAATTCAATCTGTGGTGGACTTTATGTATAAAGGTGAAATTAGTGTTGCGCAAGAACACTTGCAAAGTCTAATTAAAGCAGCGGAAAGTCTACAAGTGCGTGGTCTAGCTCAAGATGCTTTTGAGGCAGAAAAAGAATTTAACGCGATAACAAATCAAACGCCCACACCGTCGGCATCCCCAAATGAATTCGACCGAAACTTTTATTCAAGTCGACGTGGTGCTTCTACAACAATATCCACGACATTGCCCACCGACAGACCGTCGTCTCCTTTTAATACAACAAATTCCCTGATAAATTACGAAAGTGGTCATAAGTTACCGCATATGAATCACTTAAGTTTTTCCGATACGCTCGTACCACGATCGGATAGTCAATCTCCAATACCTCGAAGAAAGCAAGCGAGGCCCAGGAGAAGATCTGGAGAAATGTGTGTAGCTCAAGACCTTACTACCAATAGTACAAAATCGACATCACCATCGCAAGACGTAGCCGaaaatttaagtgttaaaaGGAAACTACACGAGTTTGACGCGTcgaaatctaaattaaataaagtagatGTTTCTAAAAGTCCAGAATTGGATTTAAATATGCCACTAGAAAAAGATTACGATCATTCTCCATCTTTATCAATTCCTCCGGTTCTTAACTTACATCAGGACATGGACACTCATTCTACACATTCGCCGTTGCCTTTCCCTCCAATGCCGTCAGTTTCAGCTCTAGCCTTGTCGTCACCTAAATTTTTCGGTATAGATTCGCCATTGGGTCTATTTCCAAACGGTATAGATTGCAGAAATCCCCTCTTAGAAATGGCAGATCCAAGGAATACGCCAGATCAGCAGTTCTATAACAAGAAAAAAATAGGAAGGCCTAAAGGTCAACATTCCGCCCCTCGGGGTGGACCGCCCAGGTCGTGGACAAATGCAGAACTAACTGAAGCTTTACAACAGGTTTGGTACAAAAAAATGACAACGAGTCAAGCATCTAGAGTATTTGGAATACCCTACAATTCACTTCTAATGTATGTCCGAGGAAAATATGGTAAAAGTCTAAAATTGGAGCAGTTGAGACAAGACTGTATAAACGGAACGCCGCCGGATTACATGGGTAGTTTgagaagtaataataataataattgcaaatcAGAACCACGCGAATTAGAAGCTGTTCAACCAAACACGAGGCCTTCCAGCAGGGAACAACAGTCGCCACCTCAATCACACATGTATAATCATTTCACACCAAATTTTTATCCAGATTTTGGAACACCGTTTCCAATTCCGGTCAACATGATACACTTACTCCCACAGAGTGAAAAGAATCGCGATCAGTACTCCTCGCAGCCGCTACAATCCATAGAAGTTAACTCAAAAAGTGATCGGATTAAACTAGAAAACGAAAGTAGAGAAGTTGTAAAACAAAACGGgcaaaattag
- Protein Sequence
- MSESHYSLRWNNHQAHMLNSFEALFQTESLVDVTLVCEEFSIRAHKVVLSAGSPLFEKIISENPCRHPVIVLKDYTGWEIQSVVDFMYKGEISVAQEHLQSLIKAAESLQVRGLAQDAFEAEKEFNAITNQTPTPSASPNEFDRNFYSSRRGASTTISTTLPTDRPSSPFNTTNSLINYESGHKLPHMNHLSFSDTLVPRSDSQSPIPRRKQARPRRRSGEMCVAQDLTTNSTKSTSPSQDVAENLSVKRKLHEFDASKSKLNKVDVSKSPELDLNMPLEKDYDHSPSLSIPPVLNLHQDMDTHSTHSPLPFPPMPSVSALALSSPKFFGIDSPLGLFPNGIDCRNPLLEMADPRNTPDQQFYNKKKIGRPKGQHSAPRGGPPRSWTNAELTEALQQVWYKKMTTSQASRVFGIPYNSLLMYVRGKYGKSLKLEQLRQDCINGTPPDYMGSLRSNNNNNCKSEPRELEAVQPNTRPSSREQQSPPQSHMYNHFTPNFYPDFGTPFPIPVNMIHLLPQSEKNRDQYSSQPLQSIEVNSKSDRIKLENESREVVKQNGQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270073;
- 90% Identity
- iTF_00271473; iTF_01291939; iTF_01291430; iTF_01294037; iTF_01293536; iTF_00272405; iTF_00272940; iTF_00268086; iTF_00268748; iTF_00270073; iTF_00269684; iTF_00927452; iTF_00927895;
- 80% Identity
- iTF_00271473;