Cnig013482.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:50360758-50362056[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6 3.5e+03 -0.9 0.1 21 30 87 96 82 104 0.84 2 10 0.017 37 5.4 0.1 21 52 115 146 110 149 0.77 3 10 1.4 3.1e+03 -0.8 0.0 22 53 144 174 141 175 0.72 4 10 0.0013 2.7 9.0 0.2 21 45 205 229 197 236 0.84 5 10 0.27 5.8e+02 1.5 0.3 22 47 234 259 229 266 0.83 6 10 3.4 7.5e+03 -2.0 0.0 22 44 262 284 258 288 0.76 7 10 0.0093 20 6.2 0.0 21 45 289 313 284 316 0.91 8 10 0.0026 5.7 8.0 0.0 21 46 317 342 314 348 0.89 9 10 2 4.3e+03 -1.2 0.0 25 47 349 371 343 376 0.77 10 10 0.0091 20 6.2 0.0 22 45 374 397 369 401 0.89
Sequence Information
- Coding Sequence
- ATGGCGCACAATTATTGCAACATAACCACAAAACAAGAAGAGATGATAATTGATCAAATGCATTCGGaagtacaaaatttgcaaattctGTGTAATTTGAAgtgcaatattaaaattaaaaaagaagaacTGGAAGAACTGCATCACGCTatcgacattaaagaagaagaaatcatcaaaaaacctTTTACTTGTGAAACTTGCGACTTCAAATCGCCGAACAAAAGCAGTCTAGATGTTCACATGAGAATTCAttccggggaaaaaccgtacgAGTGCGCAATTTGTGACCATAAATGCTCCCGCAAGGCTTTGCTGATATTTCACATAAGAACCCATACTGGTGAGAAACcgttttcttgtgaaatttgtgattacaaagCTTCCATTAAACAGACTTTGATCAGGCATATGAAAATTCACAAAAACGACAAACCTTTTGCTTGTAAGCTTTGCGAATACAAAACTTCGACGAATCAGTATTTGAAACATCACATGCGAACGCATACGGCAACTCCGGCTGTGTGTCACGATTCACCTTTCAAGTGTGAATTTTGTGACTATCGAAGTATTCTTGTACAAAATTTCCAACGCCACATGAGAACCCAttccggcgagaaaccgttttcCTGCCACATTTGTGACAACAAATTTTCTAGAAAGGAACATTTACGTCGGCATCTGATGAGTCATACCGACGACAAACCGTTTGCCTGTGAATTTTGTGACTGTCGGTTTAGATGTAGAAGTAATTTAAATGCCCACGTAAAGACCCACAGCGGTAAAAAACCGTTCGGTTGTGAAGTTTGCGACTATAAATGCACAACCAAACGAAGTTTGGACAATCACATAAAAACCCACactggtgagaaaccattttcTTGCAAAATTTGCGGGCTGAAATTCATACAAAAGCAAAGtttgaaaaaacatttgaacactcacactggcgagaaaccatttactTGTGAAATGTGCGGTTATAAATTTGTGCAGAAGGAACACTTGAGAAATCATTTGAAAATTCACTCCGGCGAAAAGCGGTTTCTTTGCGGTATTTGCGGCCTTAAATTTGAAACCAACCGTCATTTCCAAAGTCATCTCAAGATTCAcccgggggaaaaaccgtttgcatGTGAATTTTGCGACTATAAATCCTTTACGAAGCGAAACCTGCAACGTCATTTAAAAACTCACGGCGgaggaaaaatttttatttgcgaaACTTGCGACTCGAAACAGGCAAGTAGACTGGGTTTAATTGCTCATATAAGAACTCATAAAGATTGGAAAATATAA
- Protein Sequence
- MAHNYCNITTKQEEMIIDQMHSEVQNLQILCNLKCNIKIKKEELEELHHAIDIKEEEIIKKPFTCETCDFKSPNKSSLDVHMRIHSGEKPYECAICDHKCSRKALLIFHIRTHTGEKPFSCEICDYKASIKQTLIRHMKIHKNDKPFACKLCEYKTSTNQYLKHHMRTHTATPAVCHDSPFKCEFCDYRSILVQNFQRHMRTHSGEKPFSCHICDNKFSRKEHLRRHLMSHTDDKPFACEFCDCRFRCRSNLNAHVKTHSGKKPFGCEVCDYKCTTKRSLDNHIKTHTGEKPFSCKICGLKFIQKQSLKKHLNTHTGEKPFTCEMCGYKFVQKEHLRNHLKIHSGEKRFLCGICGLKFETNRHFQSHLKIHPGEKPFACEFCDYKSFTKRNLQRHLKTHGGGKIFICETCDSKQASRLGLIAHIRTHKDWKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271598;
- 90% Identity
- iTF_00271598;
- 80% Identity
- iTF_00271598;