Cnig013492.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:50424125-50425462[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 5.1e+03 -1.5 0.1 22 43 80 101 75 106 0.75 2 12 0.092 2e+02 3.0 0.2 21 32 107 118 102 131 0.72 3 12 0.081 1.8e+02 3.2 0.3 18 44 131 158 119 162 0.77 4 12 0.0013 2.8 8.9 0.0 21 47 163 189 159 196 0.85 5 12 0.86 1.9e+03 -0.1 0.0 21 32 191 202 187 222 0.66 6 12 0.017 37 5.4 0.4 21 44 219 242 216 246 0.85 7 12 1.5e-05 0.033 15.2 0.0 21 51 247 277 243 280 0.86 8 12 0.16 3.5e+02 2.3 0.1 21 45 275 299 272 308 0.72 9 12 3 6.6e+03 -1.8 0.1 21 36 303 319 299 336 0.67 10 12 0.012 26 5.9 0.1 21 44 359 382 346 392 0.69 11 12 2.5 5.5e+03 -1.6 0.1 21 32 387 399 383 413 0.73 12 12 0.041 90 4.2 0.0 21 45 415 439 410 442 0.88
Sequence Information
- Coding Sequence
- ATGTTGCAGGAAACTCCATGCGGTTCCACTGGTTCCTTCCAAATTAAGACAGAAGATGAAGACGCGGGATTTAATGAGGAAGctttgcatcattccattgacattaaagaagaaataTCTGTTTTCGAAACTCATCCGGGCAAAGAATGCAAACCAGAAGCAACCGGGAATCCGTTTATGTGCAATGTGTGGGAATACAAAGGTGACCTCAAGGTTCCTTTGAAAACTGGAACAGATAAGAAACCGTTCATATGTGTGATTTGTGGGTACAGCTGTAAACAAAAGGGAGTTTTGGAAATTCACGTAAGAACTCATAcaggcgaaaaaccatttaccTGCGACATctgtgactataaatgtgcaCACAAAGGAAGTTTAAAGATTCACTTACGAAGTCACACCGGTGAAAAACCGTTTACATGTGAAACTTGTAATTTCAAATGTGCTCGTAAGGAGGTTTTACgaattcatttaagaactcacacCGGTGAGAAGCCATATACTTGTGAGATCTGCGGATTCAAATGCACGCAAAacggaaattttaaaaatcatttaaggactcacaccggggaaaaaccgtttatGTGCGATATTTGTGACTACAAAGGTGCATCTAGAGGGGGTTTACACACCCATCTAAAAATCCATacaggggaaaaaccgtttatGTGTGAgctttgcgattataaatgtgcgCGCAAGTCGCACCTAAGGAGACATTTAATATctcatacgggggaaaaaccaTTCACCTGTGAAATCTGCGGTTTAAAATGCACTCAaagcgaaaatttaaaaaatcatttaaaaactcaCACTGGCGAAAAGCCGTTCATATGTGAAATTTGCGGTTACAAATGCATACAAAAAGCATTTCTGAAACTTCACTTAAGAACCCACACTGGCGAGAAGCCGTATTCGTGCGAATTTTGCGACTATAAGTGCGCGCGCAAGGGAGTATTAAACATTCATTTAAGAACGCAcaccggcgaaaaaccatttatttGCGAgttttgtgactataaatgtggTCATAAAGGAAGTTTCAAGATTCATCAAAGAACTCATACtggggaaaaaccgtttactTGTGAAATTTGTGGGTACAAATGCATACAGAAAGCTGTTCTAAATATTCATTTACGaactcacaccggcgagaaGCCGTTTTCATGTAAACTTTGCGACTATAAATGTGCACGCAAAGGAAATATGGGTATTCACGTAAAAACTCATACAGGGGAGAAACCGTTTTCGTGTGAAATTTGTGGCTACAAATGTTTACAAAAGGGTAACTTTAAAAGTCACCTAAAAACTCATGCTGGCGAAAAGTAA
- Protein Sequence
- MLQETPCGSTGSFQIKTEDEDAGFNEEALHHSIDIKEEISVFETHPGKECKPEATGNPFMCNVWEYKGDLKVPLKTGTDKKPFICVICGYSCKQKGVLEIHVRTHTGEKPFTCDICDYKCAHKGSLKIHLRSHTGEKPFTCETCNFKCARKEVLRIHLRTHTGEKPYTCEICGFKCTQNGNFKNHLRTHTGEKPFMCDICDYKGASRGGLHTHLKIHTGEKPFMCELCDYKCARKSHLRRHLISHTGEKPFTCEICGLKCTQSENLKNHLKTHTGEKPFICEICGYKCIQKAFLKLHLRTHTGEKPYSCEFCDYKCARKGVLNIHLRTHTGEKPFICEFCDYKCGHKGSFKIHQRTHTGEKPFTCEICGYKCIQKAVLNIHLRTHTGEKPFSCKLCDYKCARKGNMGIHVKTHTGEKPFSCEICGYKCLQKGNFKSHLKTHAGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271590;
- 90% Identity
- iTF_00271590;
- 80% Identity
- iTF_00271590;