Cnig026272.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294033.1:23447090-23448238[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.021 45 5.1 0.2 23 47 78 102 72 108 0.81 2 11 0.031 68 4.5 0.0 23 48 106 131 102 135 0.85 3 11 0.00025 0.54 11.3 0.0 21 52 132 163 129 165 0.89 4 11 0.012 26 5.9 0.4 22 50 161 189 158 193 0.89 5 11 0.16 3.5e+02 2.3 0.2 21 38 184 202 183 211 0.73 6 11 0.0044 9.6 7.3 0.1 20 52 211 243 199 245 0.82 7 11 2.3 5e+03 -1.4 0.1 22 31 241 250 236 267 0.67 8 11 2.7 5.9e+03 -1.7 0.1 20 30 267 277 263 282 0.83 9 11 0.092 2e+02 3.0 0.0 21 43 296 318 287 323 0.80 10 11 0.0039 8.4 7.4 0.1 20 51 324 355 321 357 0.87 11 11 0.13 2.9e+02 2.5 0.1 21 48 353 380 349 382 0.85
Sequence Information
- Coding Sequence
- aTGAAGAAATTTGTGCATATCAAACAAGAACCTGACACTGAATATAAATATAACGaagttgatattaaaaaaggagtatttataaaatttgaagttcAAGATGATATAAATGATATGAAATGCAAATTCGAAGAATTAAAACATCATTCCGTTAACATCAAAAAAGAAAGTACCTCTACTGTATCTTCAGAGACGTCGTCGTTCCAAATCCTAACTACTACAAAAGATAGAACTCCATTTGTATGCAAACGCTGCAATACTACATTTGCTCGAAAATCGAACTTGAAAAGACACTTGCTAATTCACACTGGCCTAAAACCCTACGAATGCAGCATTTGTCACGCAAAATTTAGCGAAAAATCAAAGctaaaaattcatttaactaTTCACACTGGGGAAAAACCATTCGAATGCGGAGtttgcaattcaaaatttagacaGAAATCAACCCTAAAAAAACATTTACGAATTCACACCGGCGATAAACCTTACCTCTGTCACATTTGCGACTCGAGATTTGCTCAAACCTCAAATTTAAAATGGCATACGAATGAGAAACCCTTCGCATGTGAAATTTGTGGTTACAAATGCATTGAAAAAAAGCGCATGAAGATTCATTTAAGAAGCCACACCGGTGAAAAACCGTACGCTTGTAAAATGTGCGATTATAAATCTTCGGGGAGAGAAAATTTGAACAGGCATTTAAGAATTCATACTGGCAAGAAACCCTACGTATGTAAAATTTGCAGTTACAAATGTTCAGACAAGACTAGGCGGTCGATTCATTTAAGCACCCACTCTGGTGAAAAGCCTTTTGCTTGCCAGGTTTGCGGTTTAAGATTTGCACTCAACGCAATCTTAAAATGCCACACGAGAGTTCATACAGGTGAAACTCCATTCTCATGTCAAATTTGTGGGGCTAAATTTACACAGAAAGGAAGCCTGCTAGGACATTTTTTAAGGGTTCACAGAAGTGAAAAGCGGTTTACCTGCAAAATTTGCAACTCAAAGTTTTCGCAAAAAGTGCATTTACAAGTTCATTTAAGGATTCATacaggcgagaaaccgttttCATGTGAAATGTGTGAATACCAAAGtgaaactaaacaaaaattgaatagaCATTTAAAAAGATTTCACACAACGTAA
- Protein Sequence
- MKKFVHIKQEPDTEYKYNEVDIKKGVFIKFEVQDDINDMKCKFEELKHHSVNIKKESTSTVSSETSSFQILTTTKDRTPFVCKRCNTTFARKSNLKRHLLIHTGLKPYECSICHAKFSEKSKLKIHLTIHTGEKPFECGVCNSKFRQKSTLKKHLRIHTGDKPYLCHICDSRFAQTSNLKWHTNEKPFACEICGYKCIEKKRMKIHLRSHTGEKPYACKMCDYKSSGRENLNRHLRIHTGKKPYVCKICSYKCSDKTRRSIHLSTHSGEKPFACQVCGLRFALNAILKCHTRVHTGETPFSCQICGAKFTQKGSLLGHFLRVHRSEKRFTCKICNSKFSQKVHLQVHLRIHTGEKPFSCEMCEYQSETKQKLNRHLKRFHTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271689;
- 90% Identity
- iTF_00271689;
- 80% Identity
- iTF_00271689;