Cnig013236.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:48046249-48047673[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.32 7e+02 1.3 0.0 21 44 136 159 124 162 0.89 2 10 0.033 71 4.5 0.1 21 43 164 186 160 191 0.88 3 10 0.42 9.2e+02 0.9 0.0 17 44 187 215 184 224 0.73 4 10 3.6 7.9e+03 -2.1 0.0 22 43 221 242 217 249 0.68 5 10 0.12 2.7e+02 2.6 0.0 21 46 248 273 242 281 0.87 6 10 0.14 3e+02 2.5 0.0 19 47 302 330 286 336 0.77 7 10 0.23 5.1e+02 1.7 0.8 21 50 332 365 329 368 0.62 8 10 0.00013 0.28 12.1 0.0 21 44 388 411 385 415 0.91 9 10 0.012 27 5.8 0.1 21 51 416 446 412 447 0.87 10 10 0.12 2.7e+02 2.6 0.0 21 44 444 467 441 471 0.87
Sequence Information
- Coding Sequence
- ATGGATCCCGATCTAGTCTCTCACGACTTACAAAATATGCTAACCTCTTTCGATGTTCTACAATCACCGTCCAGGTGCATTATAATAAAATCTGAGCAATCGGAAGACATTAAAGTGAAGTTGGAGGACCTGCACCATTCGATCGATATTAAAGAAGAAACTTTCATTCCGGAAGCTGAAATGAACGGAGAACGTGGAGTTAAAATAAAGTTGGAGGACTTACATCATTCGATTGATATTAAGGAAGATACATCGATTTTTGACGATcaacaatcaaaatttgaattcggtGCATGTAAAGTGGCATTTACTGGTAAATCCCAAGCCAAATCATTTGAGTGCGAATTTtgtcattataaatttccacGGAAAGGAGCTTTAAAGGTTCATTTAAGGATTCATATGGGCGAAAAACCTTTTGGCTGCGGAACTTGCAACTACAAATCGAGAACAAAACAGAATTTGGAGGAGCATATaagaactcataccggggaaaaaccctTTGCTTGTGAAATCTGTAACTTTAAATTTGCACAAATACGCGCTTTGAAAGTCCACTCGAGGACTCATACGGGCGAAAGACCTTTCCCTTGTGGAATTTGCGGTTTTAAATGTTCAACGAAGCAAGGTTTGAAAATGCACTTGATgactcataccggggaaaaaccctTTGGCTGTGAGCTTTGCGAATACAGAGCTTCAACAAAACAACACTTGAAGGTTCATTTAATGAGTCACACCAGAGAGAGACCCTTTGCGTGTGAAATTTGTGGTCTGAGATTTTCACAAACGGGAGATATGAAGGTTCATTTGATGATTCATTCGGGTGAGAAACGGTTTGCCTGTGAAATTTGCGATCACAGGTTTacgacaaaaaaatatttgaaacatcACAGAAGAACTCACACCGGAGAGAAACCTTTCGTGTGTGATGTTTGTGACTCGAAGTTCATACGGAAAGGAGATTTAAAGGTTCATTTAATGATTCACACGGGGGAGAAGCCCTTTGCCTGCcaaatttgtgactataaatgttctACGAAACAACGGTTGAAAGTGCACGTGATGACTCATACCCGAGAGAGACATTTCGCCTGTGGTATTTGTGGCTACAAGGGTTCGACGAAGCATTGTTTGAATATACATTTAATGACTCATTCCGGGGAAAAGCCCTTCACCTGTAAAATATGTCACTCAAAATTTGCACAATCGGGAGATTTAAAAGTCCACTTAATGACTCATACCGGTGAAAGACCTTTTGCTTgtgaaatttgcgactacaaaTGTAGAGCTAGAAAGTATTTGAAAggtcatttaaaaattcattccGGGGAGAAGCCTTTTGGGTGTGAAATTTGTAACTCGAAATTTACACGAAGACAAGGTTTGAAAAAACATATGTTGACCCATCGTACCGGGGAGTAA
- Protein Sequence
- MDPDLVSHDLQNMLTSFDVLQSPSRCIIIKSEQSEDIKVKLEDLHHSIDIKEETFIPEAEMNGERGVKIKLEDLHHSIDIKEDTSIFDDQQSKFEFGACKVAFTGKSQAKSFECEFCHYKFPRKGALKVHLRIHMGEKPFGCGTCNYKSRTKQNLEEHIRTHTGEKPFACEICNFKFAQIRALKVHSRTHTGERPFPCGICGFKCSTKQGLKMHLMTHTGEKPFGCELCEYRASTKQHLKVHLMSHTRERPFACEICGLRFSQTGDMKVHLMIHSGEKRFACEICDHRFTTKKYLKHHRRTHTGEKPFVCDVCDSKFIRKGDLKVHLMIHTGEKPFACQICDYKCSTKQRLKVHVMTHTRERHFACGICGYKGSTKHCLNIHLMTHSGEKPFTCKICHSKFAQSGDLKVHLMTHTGERPFACEICDYKCRARKYLKGHLKIHSGEKPFGCEICNSKFTRRQGLKKHMLTHRTGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271568;
- 90% Identity
- iTF_00271568;
- 80% Identity
- iTF_00271568;