Cnig013215.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:47978429-47980048[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.2 1.1e+04 -2.6 0.0 27 46 92 111 86 113 0.81 2 12 0.00032 0.7 10.9 0.0 21 45 114 138 108 142 0.92 3 12 0.013 28 5.8 0.0 21 43 142 164 138 173 0.86 4 12 0.43 9.4e+02 0.9 0.1 21 45 170 194 167 201 0.81 5 12 0.17 3.7e+02 2.2 0.1 21 44 198 221 187 225 0.78 6 12 0.086 1.9e+02 3.1 0.1 21 44 226 249 223 256 0.90 7 12 0.076 1.7e+02 3.3 0.0 21 44 282 305 278 310 0.81 8 12 0.011 24 6.0 0.0 21 47 310 336 306 343 0.85 9 12 0.064 1.4e+02 3.5 0.0 21 43 366 388 358 396 0.87 10 12 0.77 1.7e+03 0.1 0.1 22 50 395 423 389 424 0.84 11 12 0.011 25 6.0 0.0 21 49 423 451 420 455 0.85 12 12 2.2 4.7e+03 -1.4 0.1 20 44 475 499 465 506 0.73
Sequence Information
- Coding Sequence
- ATGAATAAACTGGAATTATCGGAAGAATTAGAAAGCAGCATCAAGGAAATTAAAACCGAGCAGGTCGAAGTTTTGGAAATTAAGCTAGAAGATCTACACCATTCGATTGAAATTAAAGAAGAGGTTTTTATAAACGAAACTCAACAGGAACCAAGttacaaaacaaagaaaatatgtaaacaatttgaATGTCGGGTATGTAACTCAATATTTACAACGAAATCACAGCTAAAACAGCATGCAAAATTTCATACCGCCACGAAGCAATTTTTGTGTACAATTTGCGGTCGCACGTTTTCGCTCAAAACATCTCTGAGAAACCACATAAAAATTCACACCGGTGAGAAACCTTTCGCATGTGATATATGCGATTTCAAAACGCGTCAGAAAGGAAACTTAAAGcatcatttaagaactcataccggcgagaaaccgtttgcttGTAAACTTTGTGATTTTAAAAGTGCCCAAAAGAGAAATTTAAAAGCTCATCAACTCAATCACACCGGCGAGAAGCCGTTTGGCTGTCATATTTGTAACTTTAAGTGTTCACAGTTGGTAACTCTGAAAGACCATATCCGAActcatacgggtgagaaaccgtttGCTTGTGATATTTGCGATTTTCGATGTGCTCGtaaaggaaatttgaaaatccACATACtaactcataccggggaaaaaccgttgcAATGCgaaatttgcgattttaaatgtttacaTTCGACGACGCTGAGAAATCACATGGTcactcataccggggaaaaacgtTTTGCgtgtgaattttgcaaatttaggTCGGTGCATAAGGCAAGTCTGAAATACCACTTGGTTACTCACACAGGGGAAAAACCGCTCTCTTGTGACATTTGCGATTTTAAGTGTATACAACAGGGAAGTTTGAAAAACCACTTACTtactcatactggcgaaaaaccatttgcatgtaaaatttgcaattataaaagtTCTCAGAAAGGAAACTTGAAGATTCATTTGATTACTCATTCAACTGAGAAACCGTTTAAGTGTGAAACTTGTGACTTTAGATGTTCGCATTTGACAAGTCTGAAAAACCACATGGTAACCCACAGTGGCGAGAAGCCGTTTGCCTGTGAACtttgtaattataaaagtttccaaaaaggaaatttgagaacTCATCAACTGACTCATTCCAACGAGAAATCGTTTATGTGCaaaatttgtgactataaatgttcaCATCTAACTACGCTGAAAAAGCACACGATGCTAACTCATGTTGCCGAAGAGCCATTCGCCTGTGgagtttgcaattttaaaagttcGCAAAAACGAACTTTGAAAGCCCATCTGCTAACCCATGCTGTCGAGAAGCCGTTGGGCTACGAAATTTGCGACTTGACATCGAGGGATAAATCAGTTTCGACAGATCAAACTACCGCAGAGGAACCCTTTGCTTGTAATACGTGCGACTATAAAACAAACGAAAAAGATCAGTTACAGTGTCATTTGAAGACTCACGGTGCTGAGAAATCGTTCACCTGTGAAACTTGCGGTTTCCGATGTTTCCAAAAGGGTCATTTGAAAACCCACATACTTACTCATACTCGTAAGAAATCTCTCGAGTCAAATTAA
- Protein Sequence
- MNKLELSEELESSIKEIKTEQVEVLEIKLEDLHHSIEIKEEVFINETQQEPSYKTKKICKQFECRVCNSIFTTKSQLKQHAKFHTATKQFLCTICGRTFSLKTSLRNHIKIHTGEKPFACDICDFKTRQKGNLKHHLRTHTGEKPFACKLCDFKSAQKRNLKAHQLNHTGEKPFGCHICNFKCSQLVTLKDHIRTHTGEKPFACDICDFRCARKGNLKIHILTHTGEKPLQCEICDFKCLHSTTLRNHMVTHTGEKRFACEFCKFRSVHKASLKYHLVTHTGEKPLSCDICDFKCIQQGSLKNHLLTHTGEKPFACKICNYKSSQKGNLKIHLITHSTEKPFKCETCDFRCSHLTSLKNHMVTHSGEKPFACELCNYKSFQKGNLRTHQLTHSNEKSFMCKICDYKCSHLTTLKKHTMLTHVAEEPFACGVCNFKSSQKRTLKAHLLTHAVEKPLGYEICDLTSRDKSVSTDQTTAEEPFACNTCDYKTNEKDQLQCHLKTHGAEKSFTCETCGFRCFQKGHLKTHILTHTRKKSLESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271593;
- 90% Identity
- iTF_00270171;
- 80% Identity
- iTF_00271593;